C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PAX3 and PAX7 binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159086 PAXBP1 9606 - 21:32733899-32771858 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290178 PAXBP1-005 32741393-32771668 protein_coding
  ENST00000331923 PAXBP1-001 32733899-32771858 protein_coding
  ENST00000421049 PAXBP1-008 32748559-32755311 nonsense_mediated_decay
  ENST00000443785 PAXBP1-006 32734820-32771687 nonsense_mediated_decay
  ENST00000445049 PAXBP1-009 32741419-32743268 nonsense_mediated_decay
  ENST00000464256 PAXBP1-007 32759402-32771792 retained_intron
  ENST00000466846 PAXBP1-002 32733900-32756794 retained_intron
  ENST00000472588 PAXBP1-004 32756342-32771668 processed_transcript
  ENST00000497873 PAXBP1-003 32734826-32752124 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290178ENST00000331923ENST00000443785ENST00000464256ENST00000466846ENST00000472588ENST00000497873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290178 N/A N/A N/A 1.518±0.00 N/A N/A N/A N/A N/A N/A 1.032±0.16 N/A 0.882±0.00 7.438±0.00
ENST00000331923 N/A 2.479±0.00 N/A 2.546±0.00 1.026±0.00 3.224±0.00 1.413±0.00 3.854±0.00 1.950±0.00 1.721±0.37 0.884±0.64 5.580±3.85 1.210±0.32 3.858±0.46
ENST00000443785 N/A N/A N/A N/A 2.041±0.00 N/A 0.425±0.00 N/A 1.252±0.00 N/A N/A 3.624±0.00 0.455±0.00 N/A
ENST00000464256 N/A N/A 4.181±0.00 1.834±0.00 N/A N/A N/A 1.511±0.00 1.333±0.00 N/A N/A 7.669±0.00 N/A N/A
ENST00000466846 0.729±0.00 2.097±0.00 0.723±0.00 1.517±0.53 1.627±0.61 1.200±0.57 0.637±0.28 0.683±0.00 0.711±0.00 0.979±0.37 0.475±0.00 1.618±0.44 0.258±0.00 2.191±0.86
ENST00000472588 N/A N/A 1.234±0.00 N/A N/A 2.295±0.00 N/A N/A 2.252±0.00 N/A N/A N/A 1.643±0.00 5.816±0.00
ENST00000497873 N/A N/A N/A N/A 2.339±0.00 N/A N/A N/A N/A 2.402±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858
CIL_0003TV CIL_0003TV_0001 CGP 21:32733899-32813743

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007517 IEA muscle organ development
GO:0008134 IEA transcription factor binding
GO:0014842 IEA regulation of satellite cell proliferation
GO:0031062 IEA positive regulation of histone methylation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:2000288 IEA positive regulation of myoblast proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062361 PAXBP1 PAX3 and PAX7 binding protein 1 protein_coding Danio_rerio
ENSMUSG00000022974 Paxbp1 PAX3 and PAX7 binding protein 1 protein_coding Mus_musculus

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