C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cysteine and glycine-rich protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159176 CSRP1 9606 - 1:201483530-201509456 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340006 CSRP1-201 201483534-201507259 protein_coding
  ENST00000367306 CSRP1-001 201483530-201509456 protein_coding
  ENST00000458271 CSRP1-005 201486158-201507123 processed_transcript
  ENST00000471596 CSRP1-003 201489734-201507103 retained_intron
  ENST00000481851 CSRP1-002 201495599-201507104 retained_intron
  ENST00000524951 CSRP1-012 201484725-201507123 protein_coding
  ENST00000526256 CSRP1-015 201484240-201507123 protein_coding
  ENST00000526317 CSRP1-014 201484677-201507123 processed_transcript
  ENST00000526723 CSRP1-013 201484677-201507123 protein_coding
  ENST00000527573 CSRP1-017 201486915-201507123 processed_transcript
  ENST00000527662 CSRP1-008 201483532-201492901 retained_intron
  ENST00000529975 CSRP1-016 201488051-201506703 processed_transcript
  ENST00000530120 CSRP1-011 201484669-201507123 processed_transcript
  ENST00000531916 CSRP1-018 201483926-201509456 protein_coding
  ENST00000532313 CSRP1-007 201483532-201496301 retained_intron
  ENST00000532460 CSRP1-004 201483979-201496573 protein_coding
  ENST00000533188 CSRP1-010 201488627-201507123 retained_intron
  ENST00000533402 CSRP1-009 201483532-201492499 retained_intron
  ENST00000533432 CSRP1-006 201484363-201506839 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340006ENST00000527573ENST00000527662ENST00000532313ENST00000532460ENST00000533402ENST00000533432
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340006 126.144±0.00 317.251±0.00 5.592±0.00 215.740±149.21 83.176±34.20 361.720±284.69 14.971±10.89 67.304±52.20 153.478±127.30 234.307±213.87 21.549±16.21 182.279±156.93 91.016±57.61 137.271±122.49
ENST00000527573 N/A N/A 32.470±0.00 150.566±0.00 159.415±0.00 216.109±0.00 17.177±0.00 26.069±0.00 789.020±0.00 61.282±0.00 9.228±0.00 74.351±0.00 N/A N/A
ENST00000527662 N/A N/A 1.822±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532313 N/A N/A 1.442±0.00 N/A 6.666±0.00 N/A N/A N/A N/A N/A 1.291±0.00 12.108±8.91 N/A N/A
ENST00000532460 N/A N/A 4.698±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533402 N/A N/A N/A N/A 4.999±0.00 N/A N/A N/A N/A 1.687±0.00 N/A 1.505±0.00 N/A 0.716±0.00
ENST00000533432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.238±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LW CIL_0001LW_0002 CGP 1:201483530-201826969

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005925 IDA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070527 IMP platelet aggregation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030980 csrp1b cysteine and glycine-rich protein 1b protein_coding Danio_rerio
ENSMUSG00000026421 Csrp1 cysteine and glycine-rich protein 1 protein_coding Mus_musculus

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