C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CUGBP, Elav-like family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159409 CELF3 9606 - 1:151702404-151716814 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290583 CELF3-001 151702405-151716814 protein_coding
  ENST00000290585 CELF3-002 151702404-151716052 protein_coding
  ENST00000419910 CELF3-006 151707507-151709537 retained_intron
  ENST00000420342 CELF3-003 151702415-151716798 protein_coding
  ENST00000470688 CELF3-004 151702405-151710325 processed_transcript
  ENST00000478829 CELF3-007 151708998-151716783 processed_transcript
  ENST00000479893 CELF3-005 151707509-151715984 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000290583ENST00000290585ENST00000419910ENST00000420342ENST00000470688ENST00000478829ENST00000479893
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000290583 N/A N/A 3.508±0.91 N/A 0.094±0.02 0.047±0.00 N/A 0.007±0.00 0.023±0.00 0.140±0.11 0.072±0.00 0.103±0.04
ENST00000290585 0.005±0.00 0.031±0.00 N/A N/A N/A 0.051±0.00 N/A N/A N/A 0.143±0.06 0.145±0.06 N/A
ENST00000419910 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00 N/A N/A
ENST00000420342 0.005±0.00 N/A 4.982±0.00 0.034±0.00 0.128±0.00 N/A 0.088±0.00 0.309±0.00 N/A N/A N/A N/A
ENST00000470688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00
ENST00000478829 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.663±0.00 N/A N/A
ENST00000479893 N/A N/A 6.175±0.00 N/A 0.293±0.00 N/A N/A N/A N/A 0.461±0.13 0.278±0.00 0.535±0.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 NAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IMP RNA binding
GO:0003729 NAS mRNA binding
GO:0005634 NAS nucleus
GO:0005737 IDA cytoplasm
GO:0007283 IEA spermatogenesis
GO:0008380 IMP RNA splicing
GO:0030317 IEA sperm motility
GO:0048026 IDA positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006983 celf3b cugbp, Elav-like family member 3b protein_coding Danio_rerio
ENSDARG00000034668 celf3a cugbp, Elav-like family member 3a protein_coding Danio_rerio
ENSMUSG00000028137 Celf3 CUGBP, Elav-like family member 3 protein_coding Mus_musculus

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