C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 28B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160050 CCDC28B 9606 + 1:32200386-32205387 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373602 CCDC28B-002 32200386-32205387 protein_coding
  ENST00000421922 CCDC28B-001 32200633-32205387 protein_coding
  ENST00000461819 CCDC28B-005 32200644-32205383 nonsense_mediated_decay
  ENST00000469003 CCDC28B-003 32200601-32203159 nonsense_mediated_decay
  ENST00000483009 CCDC28B-004 32201696-32205214 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373602ENST00000421922ENST00000461819ENST00000483009
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373602 N/A N/A 2.369±0.00 0.340±0.00 0.659±0.00 1.660±0.40 N/A N/A 1.919±0.00 2.429±1.20 5.081±1.11 3.530±1.47 16.039±0.00
ENST00000421922 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.398±0.00 N/A N/A N/A
ENST00000461819 1.892±0.00 6.752±0.00 5.471±0.00 7.605±0.00 3.213±2.50 2.156±0.00 3.238±0.00 N/A 2.317±0.00 7.513±0.00 4.170±1.05 2.791±0.78 19.859±0.00
ENST00000483009 N/A N/A N/A N/A N/A N/A N/A 0.304±0.00 1.113±0.00 N/A N/A 2.552±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0001 VISTA 1:31744429-32345312
CIL_0003PW CIL_0003PW_0002 CGP 1:32200386-32208687

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0042384 IMP cilium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011222 ccdc28b coiled-coil domain containing 28B protein_coding Danio_rerio
ENSMUSG00000028795 Ccdc28b coiled coil domain containing 28B protein_coding Mus_musculus

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