C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160218 TRAPPC10 9606 + 21:44012319-44106552 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000291574 TRAPPC10-001 44012319-44106552 protein_coding
  ENST00000380221 TRAPPC10-003 44012319-44060262 protein_coding
  ENST00000422875 TRAPPC10-002 44012325-44104733 nonsense_mediated_decay
  ENST00000459741 TRAPPC10-004 44088039-44106552 retained_intron
  ENST00000461889 TRAPPC10-010 44079793-44083015 retained_intron
  ENST00000465905 TRAPPC10-012 44089485-44098424 processed_transcript
  ENST00000468864 TRAPPC10-005 44096580-44105051 retained_intron
  ENST00000469521 TRAPPC10-008 44089760-44098534 retained_intron
  ENST00000481460 TRAPPC10-006 44079476-44082900 retained_intron
  ENST00000483973 TRAPPC10-007 44089501-44096704 processed_transcript
  ENST00000485621 TRAPPC10-011 44091753-44098425 retained_intron
  ENST00000486746 TRAPPC10-013 44089701-44098434 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000291574ENST00000380221ENST00000422875ENST00000465905ENST00000486746
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000291574 N/A N/A N/A 0.585±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380221 N/A 1.907±0.00 N/A N/A 1.734±0.00 0.828±0.00 1.599±0.00 1.720±0.46 1.989±0.00 N/A N/A N/A 1.527±0.00 4.637±0.35
ENST00000422875 3.670±0.00 3.586±0.00 0.543±0.00 4.343±1.83 2.372±0.26 2.219±0.93 1.725±0.60 1.932±0.33 1.311±0.17 3.077±0.00 2.089±0.85 3.418±0.73 2.446±0.57 6.734±2.46
ENST00000465905 N/A 8.022±0.00 N/A N/A N/A N/A N/A N/A N/A 5.582±0.00 N/A N/A N/A N/A
ENST00000486746 N/A N/A N/A N/A N/A 2.813±0.00 N/A 6.582±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0006814 TAS sodium ion transport
GO:0015081 TAS sodium ion transmembrane transporter activity
GO:0016021 TAS integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0035725 TAS sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077064 TRAPPC10 trafficking protein particle complex 10 protein_coding Danio_rerio
ENSMUSG00000000374 Trappc10 trafficking protein particle complex 10 protein_coding Mus_musculus

Loading