C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: G patch domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160818 GPATCH4 9606 - 1:156594487-156601496 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368232 GPATCH4-001 156594487-156601483 protein_coding
  ENST00000415314 GPATCH4-009 156595445-156601490 protein_coding
  ENST00000438976 GPATCH4-015 156595213-156601470 protein_coding
  ENST00000463513 GPATCH4-004 156595667-156601462 nonsense_mediated_decay
  ENST00000473910 GPATCH4-002 156595720-156601471 retained_intron
  ENST00000474904 GPATCH4-003 156596081-156601470 nonsense_mediated_decay
  ENST00000494414 GPATCH4-007 156595598-156598124 retained_intron
  ENST00000497287 GPATCH4-006 156595606-156599046 processed_transcript
  ENST00000498641 GPATCH4-008 156595717-156596505 retained_intron
  ENST00000498756 GPATCH4-005 156596294-156601466 retained_intron
  ENST00000506832 GPATCH4-010 156597468-156601479 retained_intron
  ENST00000525375 GPATCH4-012 156598967-156601479 retained_intron
  ENST00000527691 GPATCH4-011 156597764-156601496 retained_intron
  ENST00000529520 GPATCH4-016 156595720-156596502 retained_intron
  ENST00000531129 GPATCH4-013 156596080-156601479 processed_transcript
  ENST00000531900 GPATCH4-014 156597940-156601470 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368232ENST00000438976ENST00000473910ENST00000474904ENST00000494414ENST00000497287ENST00000498641ENST00000498756ENST00000531129
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368232 5.094±0.00 N/A 13.772±0.00 N/A 3.228±0.00 4.868±0.00 2.823±2.71 8.906±0.00 N/A 7.326±0.00 9.775±7.42 7.533±0.51 6.054±0.10
ENST00000438976 N/A N/A N/A N/A N/A N/A 0.412±0.00 0.268±0.00 2.206±0.00 N/A 5.998±0.00 N/A 3.716±0.00
ENST00000473910 N/A N/A N/A N/A 0.241±0.00 0.253±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474904 N/A N/A N/A 2.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494414 N/A 0.798±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497287 N/A N/A N/A N/A 1.445±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498641 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.024±0.00 N/A N/A N/A
ENST00000498756 N/A N/A N/A N/A N/A N/A N/A 0.881±0.00 1.635±0.00 N/A 1.327±0.00 N/A N/A
ENST00000531129 N/A 0.693±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091931 gpatch4 G patch domain containing 4 protein_coding Danio_rerio
ENSMUSG00000028069 Gpatch4 G patch domain containing 4 protein_coding Mus_musculus

Loading