C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 28 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160948 VPS28 9606 - 8:144423601-144428563 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000292510 VPS28-201 144423601-144428563 protein_coding
  ENST00000377348 VPS28-202 144423601-144428563 protein_coding
  ENST00000524521 VPS28-015 144426471-144428543 processed_transcript
  ENST00000526054 VPS28-003 144423617-144426983 protein_coding
  ENST00000526204 VPS28-008 144423620-144426983 nonsense_mediated_decay
  ENST00000526734 VPS28-013 144425396-144428543 processed_transcript
  ENST00000526977 VPS28-004 144423617-144426983 retained_intron
  ENST00000527797 VPS28-007 144423672-144426998 retained_intron
  ENST00000528142 VPS28-001 144423622-144426983 retained_intron
  ENST00000529182 VPS28-002 144423617-144426983 protein_coding
  ENST00000530790 VPS28-014 144425718-144428544 protein_coding
  ENST00000530836 VPS28-006 144423631-144426983 nonsense_mediated_decay
  ENST00000530983 VPS28-005 144423621-144426983 retained_intron
  ENST00000531032 VPS28-012 144424105-144428543 protein_coding
  ENST00000531924 VPS28-016 144424965-144427294 retained_intron
  ENST00000533806 VPS28-011 144423864-144428548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000292510ENST00000526054ENST00000526204ENST00000527797ENST00000529182ENST00000530790ENST00000530983ENST00000531032ENST00000533806
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000292510 N/A N/A 0.788±0.00 11.876±7.06 N/A 2.439±0.00 1.221±0.00 21.842±16.50 1.208±0.00 N/A 13.584±8.34 N/A N/A N/A
ENST00000526054 77.380±0.00 59.323±0.00 N/A 43.524±0.00 46.989±0.00 53.399±0.00 27.007±0.00 87.219±0.00 53.637±0.00 104.331±0.00 45.617±0.00 92.382±50.29 93.787±57.32 51.933±17.74
ENST00000526204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.599±0.00 N/A N/A
ENST00000527797 N/A N/A N/A N/A 1.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529182 N/A 22.308±0.00 N/A N/A N/A 11.736±0.00 N/A N/A N/A N/A N/A N/A N/A 18.967±0.00
ENST00000530790 N/A N/A N/A 6.742±0.00 N/A N/A 0.941±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000530983 N/A N/A N/A N/A N/A N/A N/A N/A 0.816±0.00 N/A N/A 0.663±0.00 N/A N/A
ENST00000531032 32.262±0.00 N/A 5.014±0.00 6.020±0.00 4.263±0.00 9.162±0.00 10.337±8.88 14.539±0.00 17.091±11.71 9.589±0.00 7.851±0.00 47.433±29.30 32.628±0.00 67.708±0.00
ENST00000533806 26.599±0.00 37.026±0.00 1.178±0.00 N/A 37.803±0.00 25.748±0.00 0.482±0.00 N/A N/A 1.517±0.00 N/A N/A 11.487±0.00 27.762±3.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000813 IDA ESCRT I complex
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0010008 TAS endosome membrane
GO:0015031 IEA protein transport
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0019068 TAS virion assembly
GO:0019082 TAS viral protein processing
GO:0031397 IDA negative regulation of protein ubiquitination
GO:0043162 IC ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0075733 TAS intracellular transport of virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045949 vps28 vacuolar protein sorting 28 (yeast) protein_coding Danio_rerio

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