C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161016 RPL8 9606 - 8:144789765-144792587 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262584 RPL8-001 144789770-144792587 protein_coding
  ENST00000394920 RPL8-002 144789769-144792389 protein_coding
  ENST00000525232 RPL8-006 144791113-144792421 retained_intron
  ENST00000526668 RPL8-012 144789768-144791959 retained_intron
  ENST00000527914 RPL8-013 144789769-144792423 protein_coding
  ENST00000528296 RPL8-011 144789769-144792125 processed_transcript
  ENST00000528957 RPL8-010 144789785-144792351 protein_coding
  ENST00000529163 RPL8-008 144789767-144792390 processed_transcript
  ENST00000529920 RPL8-004 144789802-144792143 nonsense_mediated_decay
  ENST00000531767 RPL8-007 144791507-144792420 retained_intron
  ENST00000531975 RPL8-015 144789766-144792057 nonsense_mediated_decay
  ENST00000532702 RPL8-014 144790355-144792384 protein_coding
  ENST00000533397 RPL8-016 144789809-144792153 protein_coding
  ENST00000534781 RPL8-009 144789765-144790872 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262584ENST00000394920ENST00000526668ENST00000528296ENST00000528957ENST00000529163ENST00000531975ENST00000532702ENST00000533397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262584 N/A N/A N/A N/A 129.472±117.15 N/A 4.934±0.00 194.663±0.00 16.959±0.00 4.446±0.00 N/A 1087.278±1224.69 420.293±0.00 212.424±106.89
ENST00000394920 341.886±0.00 617.005±0.00 N/A 173.516±0.00 169.621±137.66 655.898±605.02 79.620±75.87 138.152±126.13 54.012±26.46 134.866±125.26 135.476±114.02 496.740±351.42 672.618±207.54 642.860±0.00
ENST00000526668 699.476±0.00 887.882±0.00 N/A 12.667±0.00 474.129±0.00 304.961±269.54 N/A 126.561±107.75 133.421±0.00 6.430±0.00 165.849±0.00 37.527±0.00 N/A N/A
ENST00000528296 N/A N/A N/A 13.454±0.00 N/A N/A 5.608±0.00 N/A 19.493±0.00 N/A 29.414±0.00 1093.574±108.77 442.428±135.40 200.969±0.00
ENST00000528957 N/A N/A N/A 166.697±0.00 N/A N/A 185.274±0.00 149.176±0.00 179.864±0.00 875.743±0.00 199.517±0.00 336.976±0.00 202.096±0.00 115.647±0.00
ENST00000529163 N/A N/A N/A 19.244±0.00 26.084±0.00 N/A 11.391±0.00 34.651±0.00 N/A 9.114±0.00 57.169±0.00 533.786±468.41 561.159±186.08 120.842±0.00
ENST00000531975 N/A N/A 33.951±0.00 N/A N/A N/A N/A N/A 72.398±50.11 197.231±189.74 191.818±0.00 N/A N/A N/A
ENST00000532702 457.934±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 892.705±0.00 472.386±80.62 N/A
ENST00000533397 512.213±0.00 514.410±0.00 9.415±0.00 79.637±70.83 337.213±0.00 699.061±0.00 127.133±0.00 208.863±0.00 123.730±0.00 202.443±191.74 183.899±0.00 468.468±0.00 388.416±108.31 360.063±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014867 rpl8 ribosomal protein L8 protein_coding Danio_rerio
ENSMUSG00000003970 Rpl8 ribosomal protein L8 protein_coding Mus_musculus

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