C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LEM domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000161904 LEMD2 9606 - 6:33771202-33789136 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000293760 LEMD2-001 33771202-33789136 protein_coding
  ENST00000421671 LEMD2-003 33771432-33789125 nonsense_mediated_decay
  ENST00000442696 LEMD2-002 33777154-33788830 protein_coding
  ENST00000502643 LEMD2-010 33777012-33781489 processed_transcript
  ENST00000504692 LEMD2-012 33776614-33778339 protein_coding
  ENST00000506578 LEMD2-013 33771202-33777144 protein_coding
  ENST00000508327 LEMD2-004 33772325-33787001 protein_coding
  ENST00000510598 LEMD2-011 33772767-33780299 retained_intron
  ENST00000511171 LEMD2-008 33771222-33782246 retained_intron
  ENST00000512368 LEMD2-006 33778319-33784669 retained_intron
  ENST00000513701 LEMD2-005 33778331-33787097 protein_coding
  ENST00000513832 LEMD2-009 33777035-33781547 retained_intron
  ENST00000514636 LEMD2-007 33780002-33784640 retained_intron
  ENST00000614475 LEMD2-201 33771222-33789119 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000293760ENST00000421671ENST00000502643ENST00000506578ENST00000508327ENST00000511171ENST00000513832ENST00000614475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000293760 N/A N/A N/A N/A 0.770±0.00 N/A 1.832±1.21 0.760±0.00 1.059±0.42 4.966±0.00 10.318±0.00 14.911±0.00 8.938±0.63 N/A
ENST00000421671 5.692±0.00 N/A N/A N/A 4.186±0.00 5.813±0.00 N/A 7.893±0.00 2.339±0.00 7.986±0.00 N/A 8.526±0.00 6.031±2.62 11.346±0.00
ENST00000502643 N/A N/A N/A N/A N/A N/A N/A 1.601±0.00 N/A N/A N/A N/A N/A N/A
ENST00000506578 3.283±0.00 11.451±0.00 N/A 2.786±1.83 4.620±0.00 7.081±0.00 N/A 5.254±0.00 3.281±0.00 8.388±0.00 N/A 14.049±1.14 5.823±0.71 10.470±0.00
ENST00000508327 N/A N/A N/A 1.554±0.00 N/A N/A N/A N/A N/A 1.062±0.00 N/A N/A N/A N/A
ENST00000511171 N/A N/A 0.459±0.00 N/A 0.447±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513832 N/A N/A N/A N/A N/A N/A 0.805±0.00 N/A N/A 1.678±0.00 N/A N/A N/A N/A
ENST00000614475 1.743±0.00 N/A 0.731±0.00 1.663±0.93 1.495±0.00 2.226±1.11 2.442±0.00 7.006±0.00 1.877±0.92 2.925±1.81 2.098±1.35 17.154±10.41 13.067±10.79 24.222±18.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000250 CIL_000250_0001 CGP 6:33721667-33789136

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005639 IDA:IEA integral component of nuclear inner membrane
GO:0016020 IDA membrane
GO:0031965 IDA nuclear membrane
GO:0035914 IGI skeletal muscle cell differentiation
GO:0043409 IEA negative regulation of MAPK cascade

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000044857 Lemd2 LEM domain containing 2 protein_coding Mus_musculus

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