C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 35kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163002 NUP35 9606 + 2:183117513-183161680 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295119 NUP35-001 183124355-183161680 protein_coding
  ENST00000374930 NUP35-004 183124412-183161244 nonsense_mediated_decay
  ENST00000409798 NUP35-002 183117514-183161438 protein_coding
  ENST00000442895 NUP35-005 183117513-183130487 protein_coding
  ENST00000446612 NUP35-006 183117514-183133623 protein_coding
  ENST00000452137 NUP35-010 183124458-183133623 nonsense_mediated_decay
  ENST00000455063 NUP35-008 183117538-183128457 protein_coding
  ENST00000472844 NUP35-007 183117519-183120062 retained_intron
  ENST00000479162 NUP35-003 183124419-183161680 retained_intron
  ENST00000497330 NUP35-009 183124376-183131117 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295119ENST00000374930ENST00000409798ENST00000446612ENST00000452137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295119 2.826±0.00 4.545±0.00 N/A 1.921±1.18 1.601±0.96 2.279±0.00 1.812±0.00 2.531±2.13 2.906±1.07 1.226±0.53 1.500±0.02 4.655±1.60 3.007±1.47 4.549±2.74
ENST00000374930 N/A N/A N/A 0.643±0.00 N/A 1.379±0.39 0.688±0.00 2.260±0.00 N/A 0.743±0.00 0.868±0.00 2.414±0.55 1.370±0.00 3.380±0.32
ENST00000409798 N/A N/A N/A N/A N/A 1.139±0.00 N/A N/A N/A N/A N/A N/A N/A 1.632±0.17
ENST00000446612 N/A N/A 6.911±0.00 N/A N/A N/A N/A N/A N/A N/A 1.927±0.00 N/A N/A N/A
ENST00000452137 N/A N/A N/A N/A N/A N/A 0.752±0.00 N/A N/A 3.310±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Q9 CIL_0000Q9_0001 CGP 2:183078559-183161680
CIL_0000QA CIL_0000QA_0001 CGP 2:183117513-184939492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005634 IDA nucleus
GO:0005635 TAS nuclear envelope
GO:0005643 IEA nuclear pore
GO:0005886 IDA plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA:IEA nuclear membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051028 IEA mRNA transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012222 nup35 nucleoporin 35 protein_coding Danio_rerio
ENSMUSG00000026999 Nup35 nucleoporin 35 protein_coding Mus_musculus
ENSMUSG00000091900 Gm4353 predicted gene 4353 protein_coding Mus_musculus

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