C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel modifier 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163156 SCNM1 9606 + 1:151156664-151170297 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368902 SCNM1-004 151166079-151169138 protein_coding
  ENST00000368905 SCNM1-001 151166042-151170297 protein_coding
  ENST00000459799 SCNM1-005 151167868-151169133 processed_transcript
  ENST00000461862 SCNM1-002 151166022-151167979 processed_transcript
  ENST00000471039 SCNM1-003 151166066-151166950 processed_transcript
  ENST00000497147 SCNM1-006 151166669-151169111 processed_transcript
  ENST00000602841 SCNM1-007 151156664-151169133 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000368902ENST00000461862ENST00000602841
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000368902 5.997±0.00 N/A N/A N/A 9.645±0.00 1.961±0.00 3.212±0.00 N/A 20.352±13.37 N/A N/A
ENST00000461862 N/A N/A N/A N/A N/A 1.120±0.00 N/A N/A N/A N/A N/A
ENST00000602841 14.281±0.00 35.638±0.00 17.392±0.00 9.796±4.41 9.328±4.78 18.252±0.00 7.259±0.00 10.572±6.91 23.785±0.00 24.954±3.96 26.704±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UG CIL_0000UG_0002 CGP 1:151156664-151170297

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019899 IPI enzyme binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003027 scnm1 sodium channel modifier 1 protein_coding Danio_rerio
ENSMUSG00000092607 Scnm1 sodium channel modifier 1 protein_coding Mus_musculus

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