C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDC42 effector protein (Rho GTPase binding) 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163171 CDC42EP3 9606 - 2:37641882-37738468 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295324 CDC42EP3-001 37641889-37672191 protein_coding
  ENST00000422687 CDC42EP3-005 37646546-37647658 protein_coding
  ENST00000453555 CDC42EP3-006 37646484-37738468 protein_coding
  ENST00000457889 CDC42EP3-002 37645941-37672199 protein_coding
  ENST00000494083 CDC42EP3-007 37684483-37688849 retained_intron
  ENST00000611976 CDC42EP3-201 37641882-37672535 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295324ENST00000457889ENST00000611976
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295324 21.593±0.00 5.097±0.00 0.783±0.00 0.921±0.40 3.849±0.28 4.127±2.47 6.672±3.61 3.442±3.16 5.975±5.74 7.345±4.84 5.358±3.98 5.526±2.79 4.302±0.35 4.901±3.79
ENST00000457889 36.753±0.00 N/A N/A N/A N/A 16.147±0.00 N/A 11.058±0.00 1.014±0.00 33.999±0.00 N/A 11.761±2.37 7.321±0.32 20.525±0.00
ENST00000611976 N/A N/A N/A 0.826±0.00 N/A 1.369±0.00 1.958±0.00 N/A N/A N/A 2.568±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085G CIL_00085G_0001 VISTA 2:37116727-37718317
CIL_0008VK CIL_0008VK_0001 VISTA 2:37223010-37826535
CIL_0002IM CIL_0002IM_0001 CGP 2:37344574-37738468
CIL_0002IP CIL_0002IP_0001 CGP 2:37641882-38067142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005519 TAS cytoskeletal regulatory protein binding
GO:0005737 IEA cytoplasm
GO:0007165 TAS signal transduction
GO:0008360 IEA regulation of cell shape
GO:0015629 IDA actin cytoskeleton
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052783 cdc42ep3 CDC42 effector protein (Rho GTPase binding) 3 protein_coding Danio_rerio
ENSMUSG00000036533 Cdc42ep3 CDC42 effector protein (Rho GTPase binding) 3 protein_coding Mus_musculus

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