C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal sequence receptor, beta (translocon-associated protein beta)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163479 SSR2 9606 - 1:156009048-156020959 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295702 SSR2-001 156009048-156020959 protein_coding
  ENST00000368311 SSR2-002 156010221-156020950 retained_intron
  ENST00000466905 SSR2-009 156011810-156020931 nonsense_mediated_decay
  ENST00000467041 SSR2-013 156020013-156020845 retained_intron
  ENST00000472467 SSR2-003 156009049-156013040 retained_intron
  ENST00000472898 SSR2-010 156011581-156020928 retained_intron
  ENST00000473699 SSR2-005 156009335-156020946 nonsense_mediated_decay
  ENST00000474377 SSR2-011 156011810-156020914 nonsense_mediated_decay
  ENST00000480176 SSR2-004 156009129-156020935 retained_intron
  ENST00000480567 SSR2-008 156009360-156020889 protein_coding
  ENST00000484320 SSR2-006 156009107-156020912 retained_intron
  ENST00000488179 SSR2-012 156009062-156020171 retained_intron
  ENST00000496742 SSR2-007 156009105-156020933 protein_coding
  ENST00000526212 SSR2-018 156018270-156020903 protein_coding
  ENST00000529008 SSR2-014 156009086-156020917 protein_coding
  ENST00000531790 SSR2-016 156009550-156020912 nonsense_mediated_decay
  ENST00000531917 SSR2-017 156011810-156020789 protein_coding
  ENST00000532074 SSR2-015 156009115-156020914 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295702ENST00000368311ENST00000472467ENST00000480567ENST00000496742ENST00000526212ENST00000531790ENST00000532074
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295702 73.669±0.00 109.001±0.00 4.681±0.00 23.973±9.39 49.477±30.15 61.448±49.22 19.393±14.58 67.165±45.82 65.857±51.42 101.868±81.79 23.754±22.27 144.948±100.30 165.487±88.02 111.769±0.00
ENST00000368311 N/A N/A 0.313±0.00 N/A N/A 0.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472467 N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480567 18.973±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.226±0.00 N/A 43.927±0.00
ENST00000496742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.795±0.00 N/A N/A N/A
ENST00000526212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 104.576±0.00 72.418±0.00
ENST00000531790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 543.267±0.00 232.958±0.00 138.765±0.00
ENST00000532074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 218.050±0.00 105.633±0.00 52.307±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000898 CIL_000898_0001 VISTA 1:155789635-156392759
CIL_0008P5 CIL_0008P5_0001 VISTA 1:155795688-156399252

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006412 TAS translation
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005230 ssr2 signal sequence receptor, beta protein_coding Danio_rerio
ENSMUSG00000041355 Ssr2 signal sequence receptor, beta protein_coding Mus_musculus

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