C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin L1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163660 CCNL1 9606 - 3:157146508-157160760 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295925 CCNL1-201 157157023-157160094 protein_coding
  ENST00000295926 CCNL1-001 157147553-157160213 protein_coding
  ENST00000461804 CCNL1-002 157146508-157160760 protein_coding
  ENST00000464316 CCNL1-006 157147795-157154666 retained_intron
  ENST00000464575 CCNL1-015 157153042-157159255 retained_intron
  ENST00000464679 CCNL1-019 157149444-157152210 retained_intron
  ENST00000465947 CCNL1-012 157152177-157160136 nonsense_mediated_decay
  ENST00000466101 CCNL1-011 157158915-157160137 retained_intron
  ENST00000467081 CCNL1-014 157152740-157159441 retained_intron
  ENST00000467849 CCNL1-022 157148949-157149633 retained_intron
  ENST00000468977 CCNL1-020 157148316-157150074 nonsense_mediated_decay
  ENST00000470121 CCNL1-005 157148241-157160094 nonsense_mediated_decay
  ENST00000471044 CCNL1-010 157158665-157160158 retained_intron
  ENST00000471247 CCNL1-008 157147796-157152501 retained_intron
  ENST00000474539 CCNL1-007 157147796-157153828 retained_intron
  ENST00000475298 CCNL1-003 157147796-157160155 nonsense_mediated_decay
  ENST00000476367 CCNL1-004 157149005-157160110 retained_intron
  ENST00000476744 CCNL1-021 157148121-157149945 retained_intron
  ENST00000477127 CCNL1-009 157149287-157160178 nonsense_mediated_decay
  ENST00000478454 CCNL1-016 157152017-157158951 retained_intron
  ENST00000479052 CCNL1-017 157150128-157153628 processed_transcript
  ENST00000479596 CCNL1-013 157152082-157160135 retained_intron
  ENST00000481173 CCNL1-024 157149947-157150629 retained_intron
  ENST00000483789 CCNL1-018 157151400-157153106 retained_intron
  ENST00000495471 CCNL1-023 157149941-157150799 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295925ENST00000295926ENST00000461804ENST00000464316ENST00000464679ENST00000467849ENST00000468977ENST00000470121ENST00000471044ENST00000471247ENST00000474539ENST00000475298ENST00000476744ENST00000479596
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.736±0.00 N/A N/A N/A
ENST00000295926 N/A N/A N/A N/A N/A 2.832±0.00 N/A N/A N/A N/A N/A 10.781±0.73 2.737±0.09 1.800±0.00
ENST00000461804 N/A N/A N/A N/A N/A N/A N/A 3.345±0.00 N/A N/A N/A N/A N/A N/A
ENST00000464316 N/A 6.841±0.00 N/A N/A 2.988±0.00 N/A 0.813±0.00 N/A N/A 6.735±0.00 0.728±0.00 N/A N/A 0.798±0.00
ENST00000464679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.495±0.00 21.167±0.00 31.055±0.00
ENST00000467849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.011±0.00 10.083±0.00 21.999±0.00
ENST00000468977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.454±0.00 14.139±0.00
ENST00000470121 N/A N/A N/A 3.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.985±0.00
ENST00000471044 N/A N/A N/A N/A N/A N/A 4.715±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000471247 N/A 9.396±0.00 N/A N/A 4.003±0.00 N/A 0.657±0.00 3.122±0.00 1.560±0.00 6.636±0.00 N/A 11.373±2.15 1.355±0.00 N/A
ENST00000474539 2.000±0.00 4.293±0.00 2.502±0.00 2.227±0.32 5.587±2.02 6.022±0.00 0.937±0.00 3.350±0.00 0.846±0.00 7.923±4.20 1.597±0.00 4.583±1.29 0.723±0.00 0.616±0.00
ENST00000475298 5.265±0.00 11.992±0.00 N/A 3.299±0.00 6.276±0.00 4.178±0.00 2.761±0.00 9.201±0.00 6.196±0.00 18.055±0.00 4.398±0.00 24.764±0.00 3.840±0.23 4.126±0.00
ENST00000476744 N/A N/A N/A N/A N/A N/A N/A 3.575±0.00 N/A N/A N/A 30.727±0.00 N/A N/A
ENST00000479596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.490±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028X CIL_00028X_0001 CGP 3:156825481-157160760
CIL_00081H CIL_00081H_0001 VISTA 3:156827989-157431369
CIL_00028W CIL_00028W_0001 CGP 3:157146508-157533619

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012140 ccnl1b cyclin L1b protein_coding Danio_rerio
ENSDARG00000055124 ccnl1a cyclin L1a protein_coding Danio_rerio
ENSMUSG00000027829 Ccnl1 cyclin L1 protein_coding Mus_musculus

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