C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163930 BAP1 9606 - 3:52401013-52410350 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296288 BAP1-010 52401026-52409914 protein_coding
  ENST00000460680 BAP1-001 52401013-52410350 protein_coding
  ENST00000466093 BAP1-013 52402024-52403551 retained_intron
  ENST00000469613 BAP1-015 52401023-52404477 protein_coding
  ENST00000470173 BAP1-016 52407179-52409783 protein_coding
  ENST00000471532 BAP1-005 52405811-52408047 retained_intron
  ENST00000478368 BAP1-014 52401816-52403647 protein_coding
  ENST00000483984 BAP1-009 52406646-52409878 retained_intron
  ENST00000490804 BAP1-008 52403703-52405653 retained_intron
  ENST00000490917 BAP1-004 52407173-52409951 nonsense_mediated_decay
  ENST00000615113 BAP1-201 52401673-52402161 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296288ENST00000460680ENST00000466093ENST00000469613ENST00000478368ENST00000483984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296288 4.245±0.00 8.394±0.00 0.972±0.00 6.524±4.87 N/A N/A 5.139±0.00 N/A 0.967±0.00 4.640±0.00 4.861±4.25 3.017±1.64 6.789±1.72 10.303±0.00
ENST00000460680 11.071±0.00 9.374±0.00 N/A 12.750±8.63 6.759±5.58 4.304±3.54 0.558±0.00 6.391±0.00 2.226±0.44 4.977±2.74 N/A 7.105±6.26 3.943±0.00 40.410±5.91
ENST00000466093 N/A N/A N/A N/A 1.355±0.00 1.220±0.00 N/A N/A N/A N/A N/A 3.744±0.00 N/A N/A
ENST00000469613 N/A N/A N/A N/A 7.204±0.00 4.741±0.00 N/A 11.041±0.00 9.692±0.00 3.609±0.00 9.477±0.00 6.705±0.00 N/A N/A
ENST00000478368 N/A N/A N/A N/A 1.295±0.00 N/A N/A N/A N/A N/A N/A 7.534±0.00 10.041±0.00 77.607±0.00
ENST00000483984 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.595±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001558 IMP regulation of cell growth
GO:0003682 IDA chromatin binding
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006464 NAS cellular protein modification process
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008233 NAS peptidase activity
GO:0008285 TAS negative regulation of cell proliferation
GO:0016579 IDA protein deubiquitination
GO:0035517 IDA PR-DUB complex
GO:0035520 IDA monoubiquitinated protein deubiquitination
GO:0035522 IDA monoubiquitinated histone H2A deubiquitination
GO:0051726 IMP regulation of cell cycle
GO:0071108 IMP protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063051 bap1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) protein_coding Danio_rerio
ENSMUSG00000021901 Bap1 Brca1 associated protein 1 protein_coding Mus_musculus

Loading