C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: guanine nucleotide binding protein-like 3 (nucleolar)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163938 GNL3 9606 + 3:52681156-52694492 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000394799 GNL3-002 52686016-52694492 protein_coding
  ENST00000418458 GNL3-001 52685920-52694492 protein_coding
  ENST00000460073 GNL3-009 52686177-52688190 processed_transcript
  ENST00000462550 GNL3-006 52686032-52687827 retained_intron
  ENST00000468146 GNL3-007 52686005-52689086 processed_transcript
  ENST00000468885 GNL3-005 52686030-52686955 retained_intron
  ENST00000474423 GNL3-008 52686171-52687616 protein_coding
  ENST00000479230 GNL3-011 52681156-52689105 protein_coding
  ENST00000484022 GNL3-010 52688925-52692929 retained_intron
  ENST00000492349 GNL3-003 52686032-52690704 nonsense_mediated_decay
  ENST00000496254 GNL3-004 52686049-52694459 retained_intron
  ENST00000497356 GNL3-012 52693170-52693779 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394799ENST00000418458ENST00000484022ENST00000496254ENST00000497356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394799 N/A N/A N/A N/A N/A 4.010±0.00 N/A N/A N/A N/A N/A 22.752±0.00 N/A N/A
ENST00000418458 18.730±0.00 31.529±0.00 N/A 13.853±6.52 13.418±3.71 17.272±0.00 7.100±5.02 18.712±0.00 16.865±13.19 15.849±9.57 16.741±14.39 25.063±12.51 16.599±0.58 30.157±6.14
ENST00000484022 N/A N/A N/A N/A 26.964±0.00 N/A N/A N/A 15.593±0.00 N/A N/A N/A N/A N/A
ENST00000496254 N/A N/A 2.525±0.00 N/A N/A 6.165±0.00 N/A N/A N/A N/A N/A 6.259±0.00 N/A N/A
ENST00000497356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 312.663±0.00 100.596±0.00 184.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115
CIL_0002P4 CIL_0002P4_0002 CGP 3:52545352-52694492
CIL_0003R6 CIL_0003R6_0002 CGP 3:52681156-52706083

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IBA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 ISS:IEA GTP binding
GO:0005615 IDA extracellular space
GO:0005634 ISS nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 ISS nucleolus
GO:0006184 IBA GTP catabolic process
GO:0008283 IEA cell proliferation
GO:0016020 IDA membrane
GO:0042127 ISS regulation of cell proliferation
GO:0042254 IBA ribosome biogenesis
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006219 gnl3 guanine nucleotide binding protein-like 3 (nucleolar) protein_coding Danio_rerio
ENSMUSG00000042354 Gnl3 guanine nucleotide binding protein-like 3 (nucleolar) protein_coding Mus_musculus

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