C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UBX domain protein 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163960 UBXN7 9606 - 3:196347662-196432474 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296328 UBXN7-001 196347662-196432474 protein_coding
  ENST00000381887 UBXN7-007 196391838-196432397 protein_coding
  ENST00000413584 UBXN7-008 196393581-196416235 protein_coding
  ENST00000428095 UBXN7-006 196356618-196432430 protein_coding
  ENST00000429160 UBXN7-003 196354877-196432427 nonsense_mediated_decay
  ENST00000493566 UBXN7-002 196400129-196432427 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296328ENST00000428095ENST00000429160
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296328 2.376±0.00 1.358±0.00 2.680±0.00 2.976±0.60 2.816±0.46 2.990±0.22 1.634±0.36 1.544±0.15 2.433±2.02 2.420±0.01 1.084±0.11 3.040±2.07 1.485±0.49 4.805±0.37
ENST00000428095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.160±0.00
ENST00000429160 N/A N/A 1.319±0.00 8.232±0.00 6.389±0.00 5.724±0.00 3.490±0.00 0.993±0.00 8.095±0.00 7.646±0.00 2.112±0.00 5.800±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0001 VISTA 3:195819501-196421470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0008134 IPI transcription factor binding
GO:0031625 IDA ubiquitin protein ligase binding
GO:0034098 IDA Cdc48p-Npl4p-Ufd1p AAA ATPase complex
GO:0043130 IDA ubiquitin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009436 ubxn7 UBX domain protein 7 protein_coding Danio_rerio
ENSMUSG00000053774 Ubxn7 UBX domain protein 7 protein_coding Mus_musculus

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