C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATR interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164053 ATRIP 9606 + 3:48446710-48467644 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320211 ATRIP-001 48446733-48465655 protein_coding
  ENST00000346691 ATRIP-002 48446733-48465655 protein_coding
  ENST00000357105 ATRIP-201 48446710-48465655 protein_coding
  ENST00000412052 ATRIP-005 48447093-48465716 protein_coding
  ENST00000421175 ATRIP-007 48446710-48459397 protein_coding
  ENST00000424906 ATRIP-003 48446737-48465655 nonsense_mediated_decay
  ENST00000436480 ATRIP-202 48446846-48467644 protein_coding
  ENST00000454733 ATRIP-008 48446710-48460162 nonsense_mediated_decay
  ENST00000491468 ATRIP-009 48454358-48459684 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320211ENST00000346691ENST00000357105ENST00000412052ENST00000421175ENST00000424906ENST00000436480
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320211 0.701±0.00 2.355±0.00 0.167±0.00 1.580±0.75 0.202±0.00 1.107±0.00 2.260±0.00 N/A N/A 1.159±0.00 2.933±1.60 2.738±0.03 10.757±4.46
ENST00000346691 N/A N/A 0.973±0.00 N/A N/A 0.161±0.00 N/A 0.848±0.00 0.596±0.50 1.540±0.00 0.989±0.79 N/A 2.360±0.00
ENST00000357105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.943±0.00
ENST00000412052 N/A N/A 0.145±0.00 N/A N/A N/A N/A 0.249±0.00 0.116±0.00 N/A N/A N/A N/A
ENST00000421175 N/A N/A 0.526±0.00 0.569±0.00 0.597±0.00 N/A N/A N/A 0.214±0.00 N/A 0.739±0.00 N/A N/A
ENST00000424906 N/A N/A N/A N/A 0.360±0.00 N/A N/A N/A N/A N/A N/A N/A 2.041±0.00
ENST00000436480 N/A N/A N/A 0.786±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0001 VISTA 3:47843366-48458182
CIL_0002UL CIL_0002UL_0001 CGP 3:48446710-48467645

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000077 TAS DNA damage checkpoint
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006260 TAS DNA replication
GO:0006281 IEA DNA repair
GO:0015630 IDA microtubule cytoskeleton
GO:0070530 IDA K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063076 atrip ATR interacting protein protein_coding Danio_rerio
ENSMUSG00000025646 Atrip ATR interacting protein protein_coding Mus_musculus

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