C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 41
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164253 WDR41 9606 - 5:77425970-77620611 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296679 WDR41-001 77430933-77492596 protein_coding
  ENST00000414719 WDR41-201 77432245-77492289 protein_coding
  ENST00000502528 WDR41-007 77432244-77452873 retained_intron
  ENST00000503035 WDR41-010 77451291-77492477 nonsense_mediated_decay
  ENST00000504895 WDR41-024 77453866-77491285 protein_coding
  ENST00000505129 WDR41-002 77440817-77492496 nonsense_mediated_decay
  ENST00000506307 WDR41-013 77440931-77492223 nonsense_mediated_decay
  ENST00000506474 WDR41-017 77453889-77492220 nonsense_mediated_decay
  ENST00000507029 WDR41-003 77432893-77492316 protein_coding
  ENST00000507239 WDR41-014 77458859-77492222 retained_intron
  ENST00000507452 WDR41-020 77449765-77492215 processed_transcript
  ENST00000507654 WDR41-021 77436379-77492203 protein_coding
  ENST00000508154 WDR41-029 77426654-77433159 processed_transcript
  ENST00000509701 WDR41-005 77437407-77492220 nonsense_mediated_decay
  ENST00000509858 WDR41-027 77463093-77620576 processed_transcript
  ENST00000509892 WDR41-019 77449804-77492215 nonsense_mediated_decay
  ENST00000509971 WDR41-025 77453879-77620611 protein_coding
  ENST00000511036 WDR41-009 77451324-77492487 protein_coding
  ENST00000511630 WDR41-028 77436360-77451353 protein_coding
  ENST00000511791 WDR41-011 77438258-77492287 protein_coding
  ENST00000512033 WDR41-030 77426652-77436279 processed_transcript
  ENST00000512168 WDR41-008 77463124-77492507 processed_transcript
  ENST00000513417 WDR41-018 77449831-77492220 nonsense_mediated_decay
  ENST00000513917 WDR41-023 77463106-77499636 processed_transcript
  ENST00000514451 WDR41-022 77463106-77492003 processed_transcript
  ENST00000514559 WDR41-015 77451291-77492222 protein_coding
  ENST00000514878 WDR41-031 77425970-77432955 processed_transcript
  ENST00000515253 WDR41-006 77432813-77492199 protein_coding
  ENST00000515321 WDR41-016 77449815-77492221 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296679ENST00000414719ENST00000502528ENST00000506474ENST00000507029ENST00000507239ENST00000507452ENST00000515253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296679 1.959±0.00 0.810±0.00 1.096±0.00 4.530±0.00 1.706±0.00 1.779±0.23 0.971±0.38 1.751±0.00 1.438±0.64 2.524±0.78 0.561±0.00 1.570±0.91 1.521±0.23 2.196±0.34
ENST00000414719 N/A 2.286±0.00 N/A 8.403±0.00 5.757±0.00 N/A 1.061±0.32 N/A 2.042±1.11 1.797±0.00 0.786±0.07 3.139±0.49 3.340±1.40 5.582±0.45
ENST00000502528 N/A N/A 1.313±0.00 N/A 1.801±0.00 N/A 0.452±0.00 N/A N/A 3.273±0.00 N/A 1.010±0.00 N/A N/A
ENST00000506474 N/A N/A 6.812±0.00 N/A 16.055±0.00 7.911±0.00 8.264±0.00 9.235±0.00 N/A 17.277±0.00 12.781±0.00 7.609±0.00 N/A N/A
ENST00000507029 4.325±0.00 1.868±0.00 N/A N/A N/A N/A 3.538±0.00 6.377±0.00 1.531±0.00 4.122±0.00 0.713±0.00 N/A N/A 7.598±2.95
ENST00000507239 N/A N/A N/A N/A N/A 7.141±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.409±0.00 N/A N/A N/A
ENST00000515253 N/A N/A N/A N/A N/A 2.650±0.00 N/A 2.929±0.00 N/A N/A 1.089±0.00 1.310±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000979 CIL_000979_0001 VISTA 5:77339400-77940441
CIL_00091A CIL_00091A_0001 VISTA 5:77345011-77945571
CIL_0008DK CIL_0008DK_0001 VISTA 5:77424780-78026683

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009851 wdr41 WD repeat domain 41 protein_coding Danio_rerio
ENSMUSG00000042015 Wdr41 WD repeat domain 41 protein_coding Mus_musculus

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