C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CREB3 regulatory factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164463 CREBRF 9606 + 5:173056352-173139284 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296953 CREBRF-001 173056352-173139284 protein_coding
  ENST00000517882 CREBRF-007 173057344-173060455 processed_transcript
  ENST00000520420 CREBRF-004 173056368-173091536 protein_coding
  ENST00000520464 CREBRF-005 173056390-173124581 retained_intron
  ENST00000522692 CREBRF-003 173056352-173092330 protein_coding
  ENST00000523161 CREBRF-008 173057394-173086569 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296953ENST00000520420ENST00000520464
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296953 1.535±0.00 3.644±0.00 2.659±0.00 2.987±0.57 3.142±0.34 3.488±1.00 3.010±1.62 2.685±1.17 3.275±2.24 4.727±1.18 0.605±0.30 2.398±0.97 2.253±0.51 1.764±0.69
ENST00000520420 N/A N/A 5.423±0.00 N/A N/A 2.539±0.00 1.520±0.00 2.465±0.00 N/A 5.312±0.00 0.656±0.00 N/A 1.553±0.00 3.139±0.00
ENST00000520464 N/A N/A N/A N/A N/A 0.705±0.00 N/A 0.404±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0001 VISTA 5:172471670-173074006
CIL_000915 CIL_000915_0001 VISTA 5:172905793-173506594
CIL_0008HF CIL_0008HF_0001 VISTA 5:172963494-173565311
CIL_00023T CIL_00023T_0001 CGP 5:172983757-173139284
CIL_00023P CIL_00023P_0001 CGP 5:173056352-173164387

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006986 IEA response to unfolded protein
GO:0016604 IDA nuclear body
GO:0032388 IDA positive regulation of intracellular transport
GO:0034976 IDA response to endoplasmic reticulum stress
GO:0042711 IEA maternal behavior
GO:0043565 IEA sequence-specific DNA binding
GO:0045732 IDA positive regulation of protein catabolic process
GO:0051222 IDA positive regulation of protein transport
GO:1900102 IDA negative regulation of endoplasmic reticulum unfolded protein response
GO:1900170 IEA negative regulation of glucocorticoid mediated signaling pathway
GO:1902213 IEA positive regulation of prolactin signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078581 crebrf creb3 regulatory factor protein_coding Danio_rerio
ENSMUSG00000048249 Crebrf CREB3 regulatory factor protein_coding Mus_musculus

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