C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypeptide N-acetylgalactosaminyltransferase 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164574 GALNT10 9606 + 5:154190730-154420984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297107 GALNT10-001 154190730-154420984 protein_coding
  ENST00000377661 GALNT10-003 154190774-154419031 protein_coding
  ENST00000425427 GALNT10-005 154190730-154389581 protein_coding
  ENST00000517958 GALNT10-002 154403777-154419033 retained_intron
  ENST00000519235 GALNT10-010 154402790-154409639 processed_transcript
  ENST00000519544 GALNT10-009 154376317-154406256 processed_transcript
  ENST00000519571 GALNT10-008 154287470-154376367 processed_transcript
  ENST00000520647 GALNT10-004 154190735-154419012 nonsense_mediated_decay
  ENST00000521781 GALNT10-007 154190997-154376420 processed_transcript
  ENST00000521786 GALNT10-006 154190748-154219674 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297107ENST00000425427
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297107 6.228±0.00 3.090±0.00 2.053±0.00 2.990±1.53 4.165±0.00 5.412±3.49 3.252±0.00 8.677±0.00 2.048±0.20 7.572±0.00 2.007±0.00 22.694±15.47 2.735±0.13 5.243±1.75
ENST00000425427 N/A N/A 1.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C8 CIL_0009C8_0001 VISTA 5:153896309-154498445
CIL_00094E CIL_00094E_0001 VISTA 5:153896347-154498404
CIL_0001UD CIL_0001UD_0001 CGP 5:153990128-154220478
CIL_0001UE CIL_0001UE_0001 CGP 5:154038906-154420984
CIL_0001UJ CIL_0001UJ_0001 CGP 5:154190730-154461054

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0006493 IEA protein O-linked glycosylation
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000020520 Galnt10 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 protein_coding Mus_musculus

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