C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine zipper-EF-hand containing transmembrane protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165046 LETM2 9606 + 8:38386207-38409527 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297720 LETM2-001 38386441-38408544 protein_coding
  ENST00000379957 LETM2-013 38386476-38408544 protein_coding
  ENST00000518121 LETM2-006 38386545-38404833 retained_intron
  ENST00000518883 LETM2-005 38386501-38408488 nonsense_mediated_decay
  ENST00000519476 LETM2-002 38386303-38394434 protein_coding
  ENST00000523268 LETM2-004 38386502-38409527 nonsense_mediated_decay
  ENST00000523983 LETM2-003 38386501-38408543 protein_coding
  ENST00000524874 LETM2-015 38386476-38408274 protein_coding
  ENST00000526075 LETM2-008 38406487-38408543 retained_intron
  ENST00000526356 LETM2-014 38387142-38392921 protein_coding
  ENST00000527175 LETM2-009 38404413-38408544 protein_coding
  ENST00000527334 LETM2-012 38386207-38392843 protein_coding
  ENST00000527710 LETM2-007 38396973-38408544 protein_coding
  ENST00000528827 LETM2-011 38400883-38407414 processed_transcript
  ENST00000530448 LETM2-010 38404340-38408499 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297720ENST00000379957ENST00000518121ENST00000518883ENST00000519476ENST00000523268ENST00000523983ENST00000524874ENST00000526075ENST00000526356ENST00000527334ENST00000528827ENST00000530448
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297720 N/A N/A N/A 0.237±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A
ENST00000518121 N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A 0.184±0.00 N/A N/A
ENST00000518883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A 1.462±0.00
ENST00000519476 N/A 0.115±0.00 N/A 0.406±0.25 N/A N/A N/A N/A 0.031±0.00 N/A N/A 0.160±0.03 0.381±0.10 N/A
ENST00000523268 N/A 0.247±0.00 N/A 0.468±0.00 0.164±0.00 N/A N/A 0.166±0.00 0.304±0.00 0.231±0.00 0.050±0.00 0.600±0.07 N/A 1.087±0.00
ENST00000523983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.511±0.20
ENST00000524874 N/A N/A N/A 0.977±0.00 N/A N/A 0.175±0.00 N/A N/A N/A N/A N/A N/A 4.479±0.00
ENST00000526075 N/A N/A N/A N/A N/A N/A 0.185±0.00 0.115±0.00 N/A N/A N/A N/A N/A N/A
ENST00000526356 N/A N/A N/A N/A N/A N/A 0.435±0.00 N/A N/A N/A N/A 0.833±0.00 N/A N/A
ENST00000527334 N/A N/A 0.727±0.00 N/A N/A 0.792±0.00 N/A N/A N/A N/A N/A N/A 0.619±0.00 N/A
ENST00000528827 0.474±0.00 N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A 0.073±0.00 N/A N/A N/A
ENST00000530448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.967±0.00 1.056±0.52 6.526±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0008SM CIL_0008SM_0001 VISTA 8:38252496-38854674
CIL_0008H7 CIL_0008H7_0001 VISTA 8:38253282-38854976
CIL_0003Z1 CIL_0003Z1_0002 CGP 8:38269697-38409527
CIL_0008D9 CIL_0008D9_0001 VISTA 8:38350004-38951124

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005743 IEA mitochondrial inner membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077515 letm2 leucine zipper-EF-hand containing transmembrane protein 2 protein_coding Danio_rerio
ENSMUSG00000037363 Letm2 leucine zipper-EF-hand containing transmembrane protein 2 protein_coding Mus_musculus

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