C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA methyltransferase 10 homolog B (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165275 TRMT10B 9606 + 9:37753803-37778972 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297994 TRMT10B-001 37753817-37778972 protein_coding
  ENST00000377753 TRMT10B-201 37753803-37778965 protein_coding
  ENST00000377754 TRMT10B-002 37753817-37778681 protein_coding
  ENST00000488673 TRMT10B-003 37753817-37778022 nonsense_mediated_decay
  ENST00000509577 TRMT10B-008 37769557-37770755 retained_intron
  ENST00000537016 TRMT10B-007 37753817-37776430 nonsense_mediated_decay
  ENST00000537911 TRMT10B-202 37753803-37778965 protein_coding
  ENST00000538370 TRMT10B-004 37753817-37768163 nonsense_mediated_decay
  ENST00000540616 TRMT10B-005 37753817-37763757 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297994ENST00000377753ENST00000488673ENST00000537911ENST00000540616
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297994 0.640±0.00 2.281±0.00 2.037±0.00 1.060±0.24 0.582±0.00 0.155±0.00 0.619±0.20 N/A N/A N/A 2.164±1.24 0.489±0.20 1.125±0.56
ENST00000377753 N/A 1.310±0.00 N/A 0.775±0.14 1.479±0.00 0.468±0.11 0.936±0.00 1.201±0.75 N/A 0.344±0.00 1.218±0.06 N/A 1.000±0.00
ENST00000488673 N/A 1.266±0.00 N/A 0.686±0.33 0.988±0.00 0.416±0.00 0.925±0.00 N/A 1.617±0.00 N/A 1.220±0.70 0.616±0.06 0.834±0.00
ENST00000537911 N/A 1.256±0.00 1.606±0.00 1.166±0.00 N/A 0.840±0.00 1.270±0.00 N/A 0.415±0.00 N/A N/A N/A 1.036±0.00
ENST00000540616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.837±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TI CIL_0006TI_0001 CGP 9:37651000-37778972
CIL_00081A CIL_00081A_0001 VISTA 9:37738698-38340102
CIL_0006TH CIL_0006TH_0001 CGP 9:37753803-37801437

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060176 trmt10b tRNA methyltransferase 10 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000035601 Trmt10b tRNA methyltransferase 10B protein_coding Mus_musculus

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