C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spindle and kinetochore associated complex subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165480 SKA3 9606 - 13:21153595-21176602 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298260 SKA3-005 21153595-21176548 nonsense_mediated_decay
  ENST00000314759 SKA3-001 21153595-21176602 protein_coding
  ENST00000400018 SKA3-006 21153595-21176547 protein_coding
  ENST00000462482 SKA3-002 21154697-21176551 nonsense_mediated_decay
  ENST00000465471 SKA3-007 21161790-21176551 nonsense_mediated_decay
  ENST00000475251 SKA3-003 21172269-21176473 retained_intron
  ENST00000536239 SKA3-004 21168222-21172713 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298260ENST00000314759ENST00000400018ENST00000462482ENST00000465471ENST00000475251ENST00000536239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298260 N/A 0.127±0.00 N/A 0.036±0.00 N/A 0.090±0.00 N/A N/A 0.019±0.00 N/A N/A 2.686±1.82 0.700±0.10 3.224±0.00
ENST00000314759 N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A 1.827±0.80 1.128±0.00 1.553±0.92
ENST00000400018 N/A N/A 0.094±0.00 0.020±0.00 0.235±0.00 N/A 0.049±0.00 0.031±0.00 0.053±0.00 0.019±0.00 0.013±0.00 2.078±0.00 0.289±0.13 N/A
ENST00000462482 0.075±0.00 N/A N/A 0.126±0.00 0.257±0.00 N/A N/A 0.039±0.00 N/A N/A N/A 14.507±0.00 1.742±0.00 6.889±0.00
ENST00000465471 0.097±0.00 0.217±0.00 N/A 0.247±0.17 0.202±0.14 N/A 0.089±0.00 0.056±0.00 0.256±0.00 N/A N/A 2.150±0.00 N/A N/A
ENST00000475251 N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000536239 N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SS CIL_0003SS_0001 CGP 13:21140514-21176602
CIL_0004MC CIL_0004MC_0001 CGP 13:21153595-21179084

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000940 IDA condensed chromosome outer kinetochore
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005876 IDA spindle microtubule
GO:0007059 IMP chromosome segregation
GO:0007067 IMP mitotic nuclear division
GO:0031110 IDA regulation of microtubule polymerization or depolymerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069917 ska3 spindle and kinetochore associated complex subunit 3 protein_coding Danio_rerio
ENSMUSG00000021965 Ska3 spindle and kinetochore associated complex subunit 3 protein_coding Mus_musculus

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