C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: V-set and transmembrane domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165633 VSTM4 9606 - 10:49014245-49115509 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298454 VSTM4-002 49102172-49115509 protein_coding
  ENST00000332853 VSTM4-001 49014245-49115509 protein_coding
  ENST00000476018 VSTM4-003 49064151-49077291 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332853
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332853 6.773±0.00 5.699±0.00 1.599±0.00 1.819±1.07 3.533±1.34 3.057±2.38 3.184±1.90 1.697±0.71 2.289±1.79 4.083±0.93 0.498±0.30 7.534±5.85 3.956±0.29 4.788±2.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OS CIL_0007OS_0001 UCNEbase 10:48836195-49372114
CIL_0008ZL CIL_0008ZL_0001 VISTA 10:48905403-49506260

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010154 vstm4a V-set and transmembrane domain containing 4a protein_coding Danio_rerio
ENSDARG00000053186 vstm4b V-set and transmembrane domain containing 4b protein_coding Danio_rerio
ENSMUSG00000050666 Vstm4 V-set and transmembrane domain containing 4 protein_coding Mus_musculus

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