C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (zinc transporter), member 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165915 SLC39A13 9606 + 11:47407132-47416501 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354884 SLC39A13-011 47408631-47416496 protein_coding
  ENST00000362021 SLC39A13-012 47408629-47416501 protein_coding
  ENST00000524886 SLC39A13-013 47414862-47415434 processed_transcript
  ENST00000524928 SLC39A13-003 47410085-47416494 protein_coding
  ENST00000526614 SLC39A13-004 47409591-47413697 protein_coding
  ENST00000527091 SLC39A13-005 47409821-47412039 protein_coding
  ENST00000527829 SLC39A13-014 47414437-47415416 processed_transcript
  ENST00000528979 SLC39A13-009 47414296-47415095 processed_transcript
  ENST00000529740 SLC39A13-006 47412302-47413880 processed_transcript
  ENST00000531419 SLC39A13-010 47408605-47413778 protein_coding
  ENST00000531865 SLC39A13-008 47408628-47414901 protein_coding
  ENST00000531974 SLC39A13-007 47408584-47412393 protein_coding
  ENST00000533076 SLC39A13-001 47407132-47416495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354884ENST00000362021ENST00000524928ENST00000528979ENST00000529740ENST00000531865ENST00000533076
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354884 7.167±0.00 12.376±0.00 2.308±0.00 2.512±1.99 1.537±0.00 11.259±0.00 4.072±3.13 32.969±0.00 4.857±0.00 15.259±0.00 3.856±0.00 14.289±7.32 27.791±8.48 25.735±0.00
ENST00000362021 2.286±0.00 3.279±0.00 N/A 0.977±0.00 N/A N/A N/A 5.408±4.47 2.438±0.00 1.957±1.14 N/A 0.738±0.00 12.064±0.00 N/A
ENST00000524928 0.831±0.00 2.373±0.00 N/A N/A 1.231±0.00 N/A N/A N/A N/A 0.587±0.00 N/A 4.761±0.00 N/A 3.613±0.00
ENST00000528979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.108±0.00 N/A N/A
ENST00000529740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.193±0.00 N/A N/A N/A
ENST00000531865 N/A N/A N/A N/A N/A N/A N/A 0.793±0.00 N/A 0.519±0.00 N/A N/A 20.523±0.00 22.202±0.00
ENST00000533076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.314±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LM CIL_0002LM_0002 CGP 11:47354860-47416501

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005385 IC zinc ion transmembrane transporter activity
GO:0005794 ISS Golgi apparatus
GO:0006882 ISS cellular zinc ion homeostasis
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0030173 IC integral component of Golgi membrane
GO:0042803 IPI protein homodimerization activity
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0048471 ISS perinuclear region of cytoplasm
GO:0055085 IEA transmembrane transport
GO:0061448 IMP connective tissue development
GO:0071577 ISS zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000442 slc39a13 solute carrier family 39 (zinc transporter), member 13 protein_coding Danio_rerio
ENSMUSG00000002105 Slc39a13 solute carrier family 39 (metal ion transporter), member 13 protein_coding Mus_musculus

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