C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CKLF-like MARVEL transmembrane domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166091 CMTM5 9606 + 14:23376808-23379772 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339180 CMTM5-003 23377036-23379772 protein_coding
  ENST00000342473 CMTM5-004 23377037-23379772 protein_coding
  ENST00000359320 CMTM5-001 23376808-23379772 protein_coding
  ENST00000382809 CMTM5-009 23377252-23379487 protein_coding
  ENST00000397227 CMTM5-005 23377037-23379772 protein_coding
  ENST00000553750 CMTM5-006 23377047-23379771 retained_intron
  ENST00000555487 CMTM5-008 23377919-23379772 retained_intron
  ENST00000555731 CMTM5-007 23377063-23379772 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000339180ENST00000342473ENST00000359320ENST00000382809ENST00000397227ENST00000553750ENST00000555487ENST00000555731
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000339180 N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.838±0.00 0.227±0.00
ENST00000342473 N/A 0.480±0.00 0.348±0.00 2.844±0.00 0.155±0.00 N/A 0.125±0.00 0.724±0.00 N/A 0.052±0.00 N/A 0.258±0.00
ENST00000359320 N/A N/A N/A 4.343±2.48 N/A 0.352±0.00 N/A N/A N/A N/A 1.211±0.00 N/A
ENST00000382809 1.288±0.00 0.902±0.00 N/A 20.281±8.49 0.311±0.00 2.979±0.00 N/A 1.758±0.07 0.417±0.00 0.271±0.00 N/A N/A
ENST00000397227 N/A N/A N/A N/A N/A N/A N/A 0.360±0.00 0.065±0.00 0.043±0.00 N/A N/A
ENST00000553750 N/A N/A N/A 2.719±0.00 0.024±0.00 N/A N/A 0.320±0.00 0.122±0.00 0.045±0.00 0.052±0.00 0.113±0.06
ENST00000555487 N/A N/A N/A 1.133±0.00 N/A N/A N/A N/A 0.428±0.00 0.023±0.01 N/A 0.082±0.00
ENST00000555731 0.349±0.00 N/A N/A 8.793±0.00 N/A 1.618±0.00 0.025±0.00 N/A N/A 0.176±0.00 0.551±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0001 VISTA 14:23078458-23681621
CIL_0009BW CIL_0009BW_0001 VISTA 14:23137378-23739005
CIL_0008Q4 CIL_0008Q4_0001 VISTA 14:23138150-23738498
CIL_0008QH CIL_0008QH_0001 VISTA 14:23142404-23743714
CIL_0003BX CIL_0003BX_0001 CGP 14:23372809-23379772
CIL_00051L CIL_00051L_0001 CGP 14:23376808-23408277

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005125 IEA cytokine activity
GO:0005615 IEA extracellular space
GO:0006935 IEA chemotaxis
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0045662 IEA negative regulation of myoblast differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040759 Cmtm5 CKLF-like MARVEL transmembrane domain containing 5 protein_coding Mus_musculus

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