C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleolar and coiled-body phosphoprotein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166197 NOLC1 9606 + 10:102152176-102163871 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000370007 NOLC1-008 102152415-102163870 protein_coding
  ENST00000405356 NOLC1-201 102152176-102163871 protein_coding
  ENST00000461421 NOLC1-004 102152409-102160559 protein_coding
  ENST00000464969 NOLC1-002 102152395-102162599 nonsense_mediated_decay
  ENST00000476468 NOLC1-003 102152413-102159938 protein_coding
  ENST00000477977 NOLC1-006 102160730-102163866 processed_transcript
  ENST00000488254 NOLC1-009 102152404-102162600 protein_coding
  ENST00000603946 NOLC1-007 102152404-102163866 nonsense_mediated_decay
  ENST00000605788 NOLC1-001 102152176-102163866 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370007ENST00000405356ENST00000464969ENST00000476468ENST00000488254ENST00000603946ENST00000605788
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370007 4.110±0.00 9.784±0.00 N/A 5.103±3.97 3.183±0.00 4.082±1.30 1.608±1.25 2.608±0.00 3.566±0.00 7.932±0.00 4.461±3.33 6.459±3.00 7.436±3.88 5.939±3.41
ENST00000405356 N/A N/A N/A N/A N/A N/A 0.631±0.00 N/A N/A 1.459±0.00 N/A N/A N/A N/A
ENST00000464969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.377±0.00 N/A 1.843±0.00
ENST00000476468 N/A N/A N/A N/A N/A N/A 1.404±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000488254 5.188±0.00 N/A 1.236±0.00 2.227±0.00 1.956±0.67 1.201±0.00 1.916±1.54 1.913±0.00 1.770±0.00 9.766±0.00 N/A 6.377±1.60 5.850±0.63 2.649±0.00
ENST00000603946 4.525±0.00 10.658±0.00 N/A 10.296±0.00 2.494±0.00 9.685±0.00 2.227±0.00 7.688±0.00 4.638±0.00 7.738±0.00 3.425±2.91 5.460±0.84 6.513±0.00 8.677±0.00
ENST00000605788 2.158±0.00 N/A 0.297±0.00 4.514±0.19 1.925±0.03 2.936±2.12 1.658±0.00 N/A 1.161±0.00 N/A 0.516±0.00 5.125±0.53 3.181±0.00 2.827±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005WF CIL_0005WF_0001 CGP 10:102132994-102163871
CIL_0005WG CIL_0005WG_0001 CGP 10:102152176-102229589

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0005654 IEA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 TAS rRNA processing
GO:0007000 IEA nucleolus organization
GO:0007049 TAS cell cycle
GO:0007067 TAS mitotic nuclear division
GO:0015030 IEA Cajal body
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024561 nolc1 nucleolar and coiled-body phosphoprotein 1 protein_coding Danio_rerio
ENSMUSG00000015176 Nolc1 nucleolar and coiled-body phosphoprotein 1 protein_coding Mus_musculus

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