C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC11 homolog C (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166562 SEC11C 9606 + 18:59139477-59158836 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299714 SEC11C-007 59139875-59158832 nonsense_mediated_decay
  ENST00000509791 SEC11C-005 59139866-59157311 protein_coding
  ENST00000585864 SEC11C-004 59139884-59153361 retained_intron
  ENST00000587834 SEC11C-001 59139477-59158836 protein_coding
  ENST00000588875 SEC11C-006 59139899-59158832 protein_coding
  ENST00000591406 SEC11C-008 59155605-59158832 retained_intron
  ENST00000592774 SEC11C-002 59139893-59148012 processed_transcript
  ENST00000593132 SEC11C-003 59139888-59147732 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299714ENST00000509791ENST00000585864ENST00000587834ENST00000588875ENST00000591406ENST00000593132
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299714 11.814±0.00 29.184±0.00 N/A 62.390±0.00 10.942±0.00 14.747±0.00 5.835±0.00 36.324±0.00 26.608±24.83 16.733±0.00 2.308±0.00 1.953±0.00 7.192±0.22 23.687±0.00
ENST00000509791 N/A N/A 0.518±0.00 N/A 0.742±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585864 N/A N/A N/A N/A 1.450±0.00 N/A 0.317±0.00 N/A N/A 2.317±0.00 N/A N/A N/A N/A
ENST00000587834 N/A N/A 2.549±0.00 6.094±0.00 8.838±0.00 3.858±0.00 0.912±0.23 8.467±0.00 3.477±0.00 3.368±0.00 N/A 22.973±14.94 13.707±10.89 18.430±13.61
ENST00000588875 10.883±0.00 39.482±0.00 N/A 36.952±11.87 15.116±0.00 9.344±4.61 1.671±0.68 24.307±5.91 51.331±0.00 10.533±3.79 2.437±1.98 10.359±0.00 13.018±1.74 17.608±0.00
ENST00000591406 N/A N/A N/A 22.455±0.00 N/A N/A N/A N/A N/A N/A N/A 14.257±8.75 15.367±0.00 N/A
ENST00000593132 N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006O6 CIL_0006O6_0001 CGP 18:59139477-59230774

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006412 TAS translation
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008233 IEA peptidase activity
GO:0008236 IEA serine-type peptidase activity
GO:0010467 TAS gene expression
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process
GO:0050796 TAS regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024516 Sec11c SEC11 homolog C (S. cerevisiae) protein_coding Mus_musculus

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