C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 16, KSP-cadherin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166589 CDH16 9606 - 16:66908122-66918984 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299752 CDH16-001 66908122-66918984 protein_coding
  ENST00000394055 CDH16-002 66908122-66918917 protein_coding
  ENST00000565235 CDH16-008 66915220-66918847 protein_coding
  ENST00000565796 CDH16-006 66908129-66918848 protein_coding
  ENST00000567009 CDH16-009 66913185-66916396 protein_coding
  ENST00000567269 CDH16-003 66908129-66918884 nonsense_mediated_decay
  ENST00000568632 CDH16-004 66908123-66918848 protein_coding
  ENST00000568698 CDH16-005 66908133-66918852 nonsense_mediated_decay
  ENST00000570262 CDH16-007 66908124-66918876 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000299752ENST00000565235ENST00000565796ENST00000567009ENST00000567269ENST00000568632ENST00000568698ENST00000570262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000299752 N/A N/A 17.859±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565235 N/A N/A N/A N/A 0.045±0.00 N/A N/A 0.131±0.00 N/A N/A N/A
ENST00000565796 N/A N/A N/A N/A N/A N/A N/A N/A 0.168±0.00 N/A N/A
ENST00000567009 N/A N/A N/A 0.117±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000567269 0.037±0.00 N/A N/A N/A N/A N/A N/A 50.278±0.00 N/A N/A N/A
ENST00000568632 N/A N/A 7.591±0.00 N/A N/A N/A N/A 98.748±0.00 0.651±0.00 0.110±0.00 N/A
ENST00000568698 N/A 0.024±0.00 N/A 0.019±0.00 N/A 0.098±0.00 0.069±0.00 108.376±0.00 0.119±0.02 0.526±0.42 0.380±0.00
ENST00000570262 N/A N/A N/A N/A N/A N/A N/A 168.452±0.00 0.507±0.00 0.189±0.00 0.434±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0001 VISTA 16:66603173-67205657
CIL_0004IP CIL_0004IP_0001 CGP 16:66878589-66918984
CIL_0003LX CIL_0003LX_0002 CGP 16:66908122-66925644

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0016339 IEA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077570 CDH16 cadherin 16, KSP-cadherin protein_coding Danio_rerio
ENSMUSG00000031881 Cdh16 cadherin 16 protein_coding Mus_musculus

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