C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secretogranin V (7B2 protein)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166922 SCG5 9606 + 15:32641676-32697098 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300175 SCG5-001 32641676-32697098 protein_coding
  ENST00000413748 SCG5-002 32641676-32697098 protein_coding
  ENST00000470349 SCG5-006 32673055-32691763 processed_transcript
  ENST00000471027 SCG5-009 32643623-32691909 protein_coding
  ENST00000475752 SCG5-008 32684440-32697096 retained_intron
  ENST00000494364 SCG5-004 32641699-32697088 protein_coding
  ENST00000497208 SCG5-003 32641702-32696889 protein_coding
  ENST00000498069 SCG5-005 32677560-32696626 processed_transcript
  ENST00000498607 SCG5-007 32684416-32692308 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300175ENST00000413748ENST00000470349ENST00000471027ENST00000475752ENST00000494364ENST00000497208ENST00000498069ENST00000498607
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300175 N/A N/A 24.985±12.69 N/A 2.061±0.00 N/A N/A N/A N/A N/A 1.852±0.83 N/A 3.158±1.63
ENST00000413748 N/A N/A 61.558±31.91 0.154±0.00 0.568±0.14 N/A N/A N/A N/A N/A 3.602±4.04 0.499±0.00 4.510±0.00
ENST00000470349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.09 6.416±0.00
ENST00000471027 N/A N/A N/A N/A 0.397±0.00 0.058±0.00 N/A N/A N/A 0.024±0.00 N/A 0.196±0.06 N/A
ENST00000475752 2.636±0.00 0.187±0.00 14.073±0.00 0.115±0.00 0.626±0.00 N/A 0.887±0.00 0.136±0.00 N/A N/A N/A 0.100±0.00 1.995±0.00
ENST00000494364 N/A N/A N/A 0.164±0.00 0.468±0.20 N/A 0.516±0.00 0.339±0.00 0.395±0.00 N/A N/A N/A N/A
ENST00000497208 N/A 0.056±0.00 N/A 0.520±0.00 N/A N/A N/A 0.340±0.00 N/A N/A N/A 0.187±0.00 N/A
ENST00000498069 N/A N/A N/A N/A N/A 0.151±0.00 N/A 0.629±0.00 0.350±0.00 N/A 0.905±0.00 N/A N/A
ENST00000498607 0.717±0.00 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097N CIL_00097N_0001 VISTA 15:32499326-33100458
CIL_0005IJ CIL_0005IJ_0002 CGP 15:32641676-32745107

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004857 ISS enzyme inhibitor activity
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005576 IEA extracellular region
GO:0006886 ISS intracellular protein transport
GO:0007218 IEA neuropeptide signaling pathway
GO:0016486 ISS peptide hormone processing
GO:0030141 ISS:IEA secretory granule
GO:0043086 IEA negative regulation of catalytic activity
GO:0046883 ISS regulation of hormone secretion
GO:0051082 IDA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032126 scg5 secretogranin V protein_coding Danio_rerio
ENSDARG00000077045 scg5 secretogranin V protein_coding Danio_rerio
ENSMUSG00000023236 Scg5 secretogranin V protein_coding Mus_musculus

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