C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167208 SNX20 9606 - 16:50666300-50681353 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300590 SNX20-001 50666300-50681353 protein_coding
  ENST00000330943 SNX20-002 50671625-50681352 protein_coding
  ENST00000423026 SNX20-003 50666300-50681312 protein_coding
  ENST00000568993 SNX20-004 50666558-50681302 nonsense_mediated_decay
  ENST00000610485 SNX20-201 50673334-50681206 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300590ENST00000330943ENST00000423026ENST00000568993ENST00000610485
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300590 0.087±0.00 N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 0.147±0.00 0.082±0.00
ENST00000330943 0.251±0.00 3.778±0.00 0.090±0.00 0.463±0.00 0.947±0.00 0.160±0.00 0.172±0.14 0.212±0.06 0.316±0.00 1.266±0.16 N/A 0.476±0.41 1.236±0.53 N/A
ENST00000423026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 0.086±0.00 N/A N/A
ENST00000568993 N/A N/A 0.114±0.00 N/A 0.180±0.00 0.246±0.00 0.093±0.00 0.158±0.00 0.237±0.13 N/A 0.168±0.04 0.317±0.08 0.423±0.11 N/A
ENST00000610485 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.342±0.00 0.609±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0001 UCNEbase 16:50459337-51906374
CIL_00090I CIL_00090I_0001 VISTA 16:50514444-51115745
CIL_00085B CIL_00085B_0001 VISTA 16:50535781-51137187
CIL_00090J CIL_00090J_0001 VISTA 16:50540952-51141798
CIL_0003PT CIL_0003PT_0001 CGP 16:50548330-50681353
CIL_00090K CIL_00090K_0001 VISTA 16:50643117-51244272
CIL_00090L CIL_00090L_0001 VISTA 16:50648118-51248778
CIL_0003PS CIL_0003PS_0001 CGP 16:50666300-50733077

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005768 IEA endosome
GO:0005886 IEA plasma membrane
GO:0015031 IEA protein transport
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045554 snx20 sorting nexin 20 protein_coding Danio_rerio
ENSMUSG00000031662 Snx20 sorting nexin 20 protein_coding Mus_musculus

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