C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, alpha 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167552 TUBA1A 9606 - 12:49184796-49189324 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295766 TUBA1A-002 49184959-49188899 protein_coding
  ENST00000301071 TUBA1A-001 49184796-49189324 protein_coding
  ENST00000546918 TUBA1A-011 49185621-49189066 protein_coding
  ENST00000547939 TUBA1A-009 49185602-49189066 protein_coding
  ENST00000548363 TUBA1A-015 49186016-49188983 retained_intron
  ENST00000550254 TUBA1A-014 49186163-49189001 retained_intron
  ENST00000550767 TUBA1A-006 49185010-49186864 protein_coding
  ENST00000550811 TUBA1A-010 49186653-49187458 protein_coding
  ENST00000552924 TUBA1A-008 49185925-49189078 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295766ENST00000301071ENST00000550767
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.887±0.00 44.280±0.00 34.118±0.00
ENST00000301071 14.588±0.00 46.433±0.00 0.946±0.00 173.537±98.80 43.975±0.00 29.211±21.22 11.398±7.67 39.736±0.00 14.605±10.81 18.509±12.52 3.282±0.00 85.308±58.76 88.138±33.09 24.236±9.05
ENST00000550767 N/A N/A 1.106±0.00 106.794±0.00 N/A 8.317±0.00 4.205±0.00 0.847±0.00 17.917±0.00 9.797±0.00 5.693±0.00 13.242±0.00 31.829±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000B CIL_00000B_0001 CGP 12:49127782-49189324

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003924 IEA GTPase activity
GO:0005198 TAS structural molecule activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005874 TAS microtubule
GO:0005881 IEA cytoplasmic microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA:TAS microtubule-based process
GO:0019904 IEA protein domain specific binding
GO:0030705 TAS cytoskeleton-dependent intracellular transport
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0051301 TAS cell division
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000072235 Tuba1a tubulin, alpha 1A protein_coding Mus_musculus

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