C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167632 TRAPPC9 9606 - 8:139730343-140458579 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389328 TRAPPC9-001 139730343-140458579 protein_coding
  ENST00000438773 TRAPPC9-002 139730345-140457762 protein_coding
  ENST00000517667 TRAPPC9-009 139988740-140238493 processed_transcript
  ENST00000518723 TRAPPC9-013 139904432-139908695 retained_intron
  ENST00000518839 TRAPPC9-008 140215910-140262730 processed_transcript
  ENST00000519482 TRAPPC9-012 139731044-139908758 processed_transcript
  ENST00000520532 TRAPPC9-007 139988823-140262731 processed_transcript
  ENST00000520857 TRAPPC9-003 139730345-140450930 protein_coding
  ENST00000521167 TRAPPC9-006 140283987-140302835 processed_transcript
  ENST00000521667 TRAPPC9-004 139730892-140291251 processed_transcript
  ENST00000521700 TRAPPC9-014 139731006-139806233 processed_transcript
  ENST00000521944 TRAPPC9-005 140405293-140435197 retained_intron
  ENST00000522504 TRAPPC9-015 139730996-139881295 processed_transcript
  ENST00000523777 TRAPPC9-010 139732162-140082153 processed_transcript
  ENST00000524162 TRAPPC9-011 139732093-140008591 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000438773ENST00000520857ENST00000523777
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000438773 3.568±0.00 3.549±0.00 2.343±0.00 3.735±1.76 3.064±0.54 1.391±0.00 2.681±1.40 3.128±1.51 2.046±0.40 3.461±0.67 13.960±9.60 3.290±1.87 3.454±0.28 5.161±1.01
ENST00000520857 4.042±0.00 3.223±0.00 N/A 2.551±1.78 2.093±1.08 2.760±0.00 0.937±0.00 2.641±0.00 2.632±0.00 3.835±0.00 N/A 4.044±1.90 3.629±0.35 3.928±2.74
ENST00000523777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.178±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q0 CIL_0004Q0_0001 CGP 8:139600838-140458579
CIL_0002Y5 CIL_0002Y5_0001 CGP 8:139730343-140517137

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076113 trappc9 trafficking protein particle complex 9 protein_coding Danio_rerio
ENSDARG00000094353 TRAPPC9 (2 of 2) trafficking protein particle complex 9 protein_coding Danio_rerio
ENSMUSG00000047921 Trappc9 trafficking protein particle complex 9 protein_coding Mus_musculus

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