C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Hepatoma-derived growth factor-related protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167674 HDGFRP2 9606 + 19:4472287-4502211 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000587016 HDGFRP2-007 4496333-4502104 protein_coding
  ENST00000589486 HDGFRP2-010 4474892-4493762 protein_coding
  ENST00000592417 HDGFRP2-005 4498362-4502208 protein_coding
  ENST00000592691 HDGFRP2-009 4474912-4488836 protein_coding
  ENST00000601353 HDGFRP2-011 4472308-4491682 nonsense_mediated_decay
  ENST00000614903 HDGFRP2-004 4499589-4502033 protein_coding
  ENST00000615225 HDGFRP2-003 4475349-4502201 nonsense_mediated_decay
  ENST00000616600 HDGFRP2-001 4472287-4502211 protein_coding
  ENST00000619255 HDGFRP2-008 4499629-4501578 protein_coding
  ENST00000621835 HDGFRP2-002 4472306-4502207 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000587016ENST00000592417ENST00000592691ENST00000601353ENST00000615225ENST00000616600ENST00000621835
Transcript ID Adrenal Bladder Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000587016 N/A N/A N/A N/A N/A N/A N/A 18.805±0.00 29.576±0.00 80.000±0.00
ENST00000592417 N/A N/A N/A N/A 2.969±0.00 N/A N/A N/A N/A N/A
ENST00000592691 N/A N/A N/A N/A N/A N/A 2.433±0.00 N/A N/A N/A
ENST00000601353 N/A 2.486±0.00 N/A N/A 3.651±0.00 N/A N/A N/A N/A N/A
ENST00000615225 N/A N/A N/A N/A N/A N/A N/A 0.850±0.00 N/A N/A
ENST00000616600 11.302±0.00 1.616±0.00 8.587±6.01 23.026±0.00 6.412±0.00 5.389±0.00 6.082±4.71 19.892±16.70 16.270±4.20 29.195±1.74
ENST00000621835 7.666±0.00 N/A 4.926±3.50 N/A 9.010±0.00 5.233±0.00 3.162±0.00 11.331±11.15 7.500±2.16 17.830±2.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Z9 CIL_0002Z9_0001 CGP 19:4444999-4502211
CIL_0002YS CIL_0002YS_0001 CGP 19:4472287-4517704

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019530 hdgfrp2 hepatoma-derived growth factor, related protein 2 protein_coding Danio_rerio
ENSMUSG00000002833 Hdgfrp2 hepatoma-derived growth factor, related protein 2 protein_coding Mus_musculus

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