C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 68kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167881 SRP68 9606 - 17:76038775-76072653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307877 SRP68-001 76039103-76072653 protein_coding
  ENST00000539137 SRP68-002 76039106-76072507 protein_coding
  ENST00000542536 SRP68-004 76039106-76053656 processed_transcript
  ENST00000585539 SRP68-010 76061175-76064022 processed_transcript
  ENST00000586859 SRP68-013 76043375-76046061 retained_intron
  ENST00000587864 SRP68-011 76061150-76064127 retained_intron
  ENST00000588643 SRP68-006 76039104-76041628 retained_intron
  ENST00000588736 SRP68-005 76044754-76049647 retained_intron
  ENST00000590833 SRP68-012 76057397-76060742 retained_intron
  ENST00000591272 SRP68-008 76064038-76072507 nonsense_mediated_decay
  ENST00000592704 SRP68-009 76039551-76072497 nonsense_mediated_decay
  ENST00000602720 SRP68-201 76038775-76053648 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307877ENST00000539137ENST00000590833ENST00000591272ENST00000592704ENST00000602720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307877 28.665±0.00 7.916±0.00 2.003±0.00 10.046±7.12 9.581±3.81 14.485±10.55 7.325±6.34 10.861±7.93 6.030±0.89 16.904±11.66 23.747±21.35 21.508±11.30 28.365±3.45 16.449±1.73
ENST00000539137 N/A 9.527±0.00 N/A 3.075±1.86 7.410±0.00 N/A N/A 3.037±1.52 8.652±0.00 N/A 9.686±8.91 1.434±0.00 N/A N/A
ENST00000590833 N/A N/A 5.517±0.00 N/A N/A N/A N/A 9.229±0.00 N/A N/A 7.886±0.00 N/A N/A N/A
ENST00000591272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.182±0.00 18.817±0.00 11.086±0.00
ENST00000592704 N/A N/A N/A N/A N/A N/A 3.903±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000602720 N/A N/A N/A 2.094±0.00 N/A N/A N/A 1.839±0.00 3.733±0.00 N/A 2.797±0.00 8.622±0.77 7.557±1.26 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078N CIL_00078N_0001 CGP 17:76004502-76072653

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005047 IPI signal recognition particle binding
GO:0005730 TAS nucleolus
GO:0005783 TAS endoplasmic reticulum
GO:0005786 IDA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0005840 TAS ribosome
GO:0006412 TAS translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020820 srp68 signal recognition particle 68 protein_coding Danio_rerio
ENSMUSG00000020780 Srp68 signal recognition particle 68 protein_coding Mus_musculus

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