C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 signalosome subunit 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168090 COPS6 9606 + 7:100088954-100092200 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303904 COPS6-001 100088954-100092200 protein_coding
  ENST00000418625 COPS6-004 100088981-100091905 protein_coding
  ENST00000419210 COPS6-007 100088975-100089627 protein_coding
  ENST00000426712 COPS6-005 100090428-100091907 nonsense_mediated_decay
  ENST00000465027 COPS6-006 100088969-100090362 retained_intron
  ENST00000468499 COPS6-003 100088990-100091248 retained_intron
  ENST00000472107 COPS6-002 100088982-100090238 retained_intron
  ENST00000474823 COPS6-010 100090362-100091750 retained_intron
  ENST00000483891 COPS6-008 100090437-100091448 retained_intron
  ENST00000496358 COPS6-009 100088993-100090780 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303904ENST00000418625ENST00000426712ENST00000468499ENST00000496358
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303904 21.246±0.00 29.187±0.00 1.658±0.00 14.012±8.42 10.916±6.08 10.416±6.82 5.162±2.61 10.816±7.57 6.906±2.21 6.036±3.96 11.217±3.44 23.188±16.82 21.616±7.62 21.571±12.12
ENST00000418625 38.627±0.00 30.955±0.00 N/A 46.237±0.00 17.589±15.93 22.188±18.85 28.683±0.00 16.333±14.75 10.502±7.33 23.572±0.00 43.153±0.00 33.360±19.03 55.358±11.95 34.559±20.07
ENST00000426712 N/A 21.382±0.00 N/A N/A 12.986±0.00 26.861±0.00 13.991±0.00 32.492±0.00 15.852±0.00 23.149±0.00 18.482±14.11 N/A N/A N/A
ENST00000468499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.285±0.00 N/A N/A
ENST00000496358 N/A N/A 2.322±0.00 4.957±0.00 N/A N/A 1.405±0.00 3.122±0.00 N/A N/A 7.333±0.00 32.409±26.73 49.345±0.00 20.691±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0002GB CIL_0002GB_0001 CGP 7:100064033-100092200
CIL_0003E2 CIL_0003E2_0001 CGP 7:100088954-100101940

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0008180 IDA COP9 signalosome
GO:0010388 IDA cullin deneddylation
GO:0016032 IEA viral process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079173 COPS6 COP9 signalosome subunit 6 protein_coding Danio_rerio
ENSMUSG00000019494 Cops6 COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana) protein_coding Mus_musculus

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