C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: G elongation factor, mitochondrial 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168827 GFM1 9606 + 3:158644278-158692575 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264263 GFM1-004 158644597-158692569 protein_coding
  ENST00000312756 GFM1-006 158652198-158657518 retained_intron
  ENST00000464732 GFM1-007 158644705-158646781 protein_coding
  ENST00000472383 GFM1-010 158684631-158691899 protein_coding
  ENST00000477721 GFM1-011 158681988-158690586 retained_intron
  ENST00000478251 GFM1-005 158646888-158651020 retained_intron
  ENST00000478254 GFM1-003 158644528-158692572 nonsense_mediated_decay
  ENST00000478576 GFM1-002 158644528-158682433 protein_coding
  ENST00000481468 GFM1-009 158682107-158685314 retained_intron
  ENST00000486715 GFM1-001 158644278-158692575 protein_coding
  ENST00000490261 GFM1-008 158660264-158665407 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264263ENST00000478254ENST00000486715
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264263 3.979±0.00 6.637±0.00 3.671±0.00 3.588±2.21 6.559±0.00 4.607±0.00 7.766±0.00 9.053±0.00 4.330±1.48 5.818±0.00 6.323±0.00 2.385±1.10 4.113±1.86 5.290±3.03
ENST00000478254 3.673±0.00 3.634±0.00 N/A 5.104±0.00 2.589±0.00 N/A 5.051±0.00 1.832±0.00 5.718±0.00 2.096±0.00 2.970±1.78 3.197±0.00 2.783±1.32 6.793±0.00
ENST00000486715 2.631±0.00 N/A N/A 6.408±0.00 9.373±0.00 3.259±1.52 4.607±0.00 3.897±0.04 1.622±0.00 2.583±0.00 3.643±0.00 6.168±0.39 5.325±3.27 10.384±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_000808 CIL_000808_0001 VISTA 3:158183764-158784540
CIL_000815 CIL_000815_0001 VISTA 3:158228062-158828791
CIL_000937 CIL_000937_0001 VISTA 3:158468467-159075583
CIL_0004JV CIL_0004JV_0002 CGP 3:158571163-158692575
CIL_0004JU CIL_0004JU_0002 CGP 3:158644278-158692575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 IDA:IEA translation elongation factor activity
GO:0003924 IEA:IDA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005739 IEA mitochondrion
GO:0006184 IEA GTP catabolic process
GO:0006414 IEA translational elongation
GO:0044822 IDA poly(A) RNA binding
GO:0070125 IDA mitochondrial translational elongation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063624 gfm1 G elongation factor, mitochondrial 1 protein_coding Danio_rerio
ENSMUSG00000027774 Gfm1 G elongation factor, mitochondrial 1 protein_coding Mus_musculus

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