C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168904 LRRC28 9606 + 15:99251362-99390729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301981 LRRC28-001 99251362-99390729 protein_coding
  ENST00000331450 LRRC28-002 99251541-99386296 protein_coding
  ENST00000447360 LRRC28-003 99251505-99386296 protein_coding
  ENST00000558172 LRRC28-010 99251515-99361509 protein_coding
  ENST00000558248 LRRC28-013 99320603-99352527 retained_intron
  ENST00000558471 LRRC28-009 99251463-99361511 nonsense_mediated_decay
  ENST00000558500 LRRC28-020 99251493-99297338 processed_transcript
  ENST00000558771 LRRC28-016 99286702-99352457 processed_transcript
  ENST00000558861 LRRC28-007 99251811-99334047 protein_coding
  ENST00000558879 LRRC28-008 99251362-99386202 protein_coding
  ENST00000558890 LRRC28-012 99326513-99363393 retained_intron
  ENST00000558911 LRRC28-015 99334083-99354000 processed_transcript
  ENST00000559399 LRRC28-017 99251386-99334130 processed_transcript
  ENST00000559433 LRRC28-021 99251460-99363178 nonsense_mediated_decay
  ENST00000559774 LRRC28-014 99333923-99355719 processed_transcript
  ENST00000559819 LRRC28-004 99333615-99390727 retained_intron
  ENST00000560213 LRRC28-005 99251449-99256356 retained_intron
  ENST00000560236 LRRC28-018 99363225-99388269 nonsense_mediated_decay
  ENST00000560483 LRRC28-011 99360996-99363124 retained_intron
  ENST00000561253 LRRC28-022 99251486-99333978 nonsense_mediated_decay
  ENST00000561276 LRRC28-006 99251520-99386035 protein_coding
  ENST00000561431 LRRC28-019 99384294-99386295 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301981ENST00000447360ENST00000558172ENST00000558471ENST00000558500ENST00000558861ENST00000558879ENST00000558890ENST00000559433ENST00000559819ENST00000560213ENST00000561276
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301981 N/A 0.441±0.00 N/A 0.764±0.47 0.916±0.00 1.050±0.07 0.508±0.11 1.340±0.47 1.093±0.00 N/A 0.731±0.00 0.987±0.36 0.595±0.00 0.763±0.19
ENST00000447360 2.458±0.00 N/A N/A 1.521±0.00 2.212±0.24 1.913±0.00 1.766±0.00 4.017±0.00 5.230±0.00 2.337±0.44 4.418±0.00 2.134±0.10 4.795±1.08 5.976±0.34
ENST00000558172 N/A N/A 5.294±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.088±0.00 2.587±0.00 7.158±0.00
ENST00000558471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.206±1.41 N/A N/A N/A
ENST00000558500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.177±0.00 N/A N/A
ENST00000558861 N/A N/A 4.886±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.036±0.00 N/A 3.061±0.00 10.269±0.00
ENST00000558890 N/A N/A N/A N/A N/A N/A 2.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000559433 N/A N/A N/A N/A N/A N/A N/A 3.348±0.00 N/A 2.092±0.00 N/A N/A N/A N/A
ENST00000559819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.392±0.00 N/A N/A N/A
ENST00000560213 N/A N/A N/A N/A N/A N/A N/A 6.344±0.00 3.066±0.00 N/A N/A N/A N/A N/A
ENST00000561276 4.332±0.00 1.891±0.00 N/A 3.866±0.00 N/A 5.237±2.38 3.722±0.00 3.071±0.00 5.121±1.94 1.334±0.00 5.380±0.00 2.862±0.00 2.524±0.63 10.209±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079Q CIL_00079Q_0002 CGP 15:99251362-99716466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057477 lrrc28 leucine rich repeat containing 28 protein_coding Danio_rerio
ENSMUSG00000030556 Lrrc28 leucine rich repeat containing 28 protein_coding Mus_musculus

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