C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NMD3 ribosome export adaptor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169251 NMD3 9606 + 3:161104696-161253532 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351193 NMD3-001 161221290-161252307 protein_coding
  ENST00000460469 NMD3-005 161221559-161252004 protein_coding
  ENST00000460503 NMD3-011 161104822-161234836 protein_coding
  ENST00000463518 NMD3-009 161221324-161238191 protein_coding
  ENST00000468606 NMD3-012 161104696-161233416 protein_coding
  ENST00000472947 NMD3-002 161221308-161253532 protein_coding
  ENST00000473909 NMD3-008 161221288-161234905 retained_intron
  ENST00000476237 NMD3-010 161221557-161234855 protein_coding
  ENST00000478160 NMD3-013 161224930-161235331 processed_transcript
  ENST00000493066 NMD3-007 161221262-161238191 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351193ENST00000460469ENST00000472947
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351193 12.096±0.00 8.603±0.00 1.601±0.00 6.434±1.63 8.567±1.00 7.201±4.80 8.416±2.80 12.864±0.00 7.657±0.41 11.048±1.68 5.441±2.85 9.655±1.11 5.925±2.30 7.792±2.74
ENST00000460469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.144±0.00 N/A 3.910±0.00
ENST00000472947 N/A N/A N/A N/A N/A N/A N/A 3.016±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z8 CIL_0001Z8_0001 CGP 3:160755602-161105384
CIL_0001Z9 CIL_0001Z9_0001 CGP 3:161083883-161253532
CIL_0004K1 CIL_0004K1_0002 CGP 3:161104696-161372880

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000055 IMP ribosomal large subunit export from nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0030674 IDA protein binding, bridging
GO:0043023 IDA ribosomal large subunit binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015676 nmd3 NMD3 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000027787 Nmd3 NMD3 homolog (S. cerevisiae) protein_coding Mus_musculus

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