C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor-like 13B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169379 ARL13B 9606 + 3:93980139-94055668 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303097 ARL13B-001 93980142-94055279 protein_coding
  ENST00000335438 ARL13B-002 93980190-94055279 nonsense_mediated_decay
  ENST00000394222 ARL13B-005 93980149-94054154 protein_coding
  ENST00000460371 ARL13B-009 93980170-94055281 nonsense_mediated_decay
  ENST00000471138 ARL13B-004 93980155-94054069 protein_coding
  ENST00000475206 ARL13B-003 93980270-94003902 nonsense_mediated_decay
  ENST00000478400 ARL13B-006 93980142-93996684 protein_coding
  ENST00000486562 ARL13B-007 93980214-94039915 processed_transcript
  ENST00000492165 ARL13B-008 93980288-94003909 processed_transcript
  ENST00000535334 ARL13B-201 93980139-94055668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303097ENST00000335438ENST00000394222ENST00000460371ENST00000471138ENST00000475206ENST00000486562ENST00000492165
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303097 N/A 1.453±0.00 N/A N/A 0.720±0.00 N/A 0.325±0.00 1.244±0.00 0.554±0.00 N/A N/A 0.718±0.39 0.316±0.00 N/A
ENST00000335438 1.471±0.00 0.620±0.00 N/A 0.503±0.11 0.680±0.02 N/A 0.248±0.16 1.483±0.00 0.399±0.04 N/A N/A 1.096±0.38 0.395±0.19 2.699±0.00
ENST00000394222 N/A N/A 1.057±0.00 0.902±0.20 0.274±0.00 0.966±0.15 0.340±0.00 N/A 1.475±0.00 1.875±0.00 N/A 0.634±0.00 N/A N/A
ENST00000460371 N/A N/A N/A 0.278±0.00 N/A 1.465±0.00 N/A N/A N/A N/A 0.255±0.00 0.810±0.00 1.137±0.00 3.439±0.00
ENST00000471138 1.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.212±0.00 1.932±0.00 2.215±0.00 7.183±0.00
ENST00000475206 N/A N/A N/A N/A N/A N/A 1.188±0.00 N/A N/A N/A 0.398±0.00 N/A N/A N/A
ENST00000486562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.875±0.00 N/A N/A
ENST00000492165 N/A N/A N/A 3.370±0.00 N/A N/A N/A N/A N/A 3.563±0.00 2.703±0.00 5.017±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B0 CIL_0003B0_0001 CGP 3:93980139-94055668

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001947 IEA heart looping
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005929 ISS cilium
GO:0006886 IEA intracellular protein transport
GO:0007224 ISS smoothened signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007368 IEA determination of left/right symmetry
GO:0009953 IEA dorsal/ventral pattern formation
GO:0021532 ISS neural tube patterning
GO:0021830 ISS interneuron migration from the subpallium to the cortex
GO:0021943 ISS formation of radial glial scaffolds
GO:0035058 ISS nonmotile primary cilium assembly
GO:0042384 ISS cilium assembly
GO:0060170 ISS ciliary membrane
GO:0070986 IEA left/right axis specification
GO:0072372 ISS primary cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012763 arl13b ADP-ribosylation factor-like 13b protein_coding Danio_rerio
ENSMUSG00000022911 Arl13b ADP-ribosylation factor-like 13B protein_coding Mus_musculus

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