C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syndecan 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169439 SDC2 9606 + 8:96493351-96611780 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302190 SDC2-001 96493351-96611780 protein_coding
  ENST00000518385 SDC2-002 96493813-96610174 protein_coding
  ENST00000519587 SDC2-007 96493813-96538816 processed_transcript
  ENST00000519914 SDC2-003 96580349-96610100 protein_coding
  ENST00000520233 SDC2-008 96493813-96537343 processed_transcript
  ENST00000521590 SDC2-004 96584945-96609440 protein_coding
  ENST00000522911 SDC2-006 96494008-96609643 protein_coding
  ENST00000523877 SDC2-005 96586387-96609465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302190ENST00000518385ENST00000519914ENST00000520233ENST00000522911
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302190 10.876±0.00 7.025±0.00 4.514±0.00 3.045±1.86 12.848±5.05 13.657±9.42 4.105±1.87 19.813±9.40 10.741±6.11 11.832±8.47 1.589±0.48 16.057±10.31 17.064±2.11 9.761±0.00
ENST00000518385 10.116±0.00 5.058±0.00 N/A 4.071±0.00 15.792±0.00 16.672±0.00 5.145±0.00 9.937±0.00 15.830±0.00 8.836±6.51 3.617±0.00 N/A N/A 6.496±2.68
ENST00000519914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.00 N/A N/A N/A
ENST00000520233 N/A N/A 10.214±0.00 11.724±0.00 26.024±0.00 11.534±0.00 9.309±0.00 105.060±0.00 30.635±0.00 N/A 6.427±0.00 16.379±0.90 107.311±0.00 N/A
ENST00000522911 15.201±0.00 N/A 13.529±0.00 11.027±0.91 30.037±0.00 23.028±8.14 9.872±0.00 138.583±0.00 35.129±0.00 12.142±0.00 6.177±0.00 12.662±8.61 33.867±0.00 8.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SV CIL_0006SV_0001 CGP 8:96493351-97149654

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001666 IEA response to hypoxia
GO:0005515 IPI protein binding
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030165 IPI PDZ domain binding
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031000 IEA response to caffeine
GO:0042060 IEA wound healing
GO:0043025 IEA neuronal cell body
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0045202 IEA synapse
GO:0048813 IEA dendrite morphogenesis
GO:0048814 ISS regulation of dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002731 sdc2 syndecan 2 protein_coding Danio_rerio
ENSMUSG00000022261 Sdc2 syndecan 2 protein_coding Mus_musculus

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