C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCHC-type zinc finger, nucleic acid binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169714 CNBP 9606 - 3:129169484-129183922 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000422453 CNBP-001 129169484-129183922 protein_coding
  ENST00000441626 CNBP-009 129170102-129183910 protein_coding
  ENST00000446936 CNBP-011 129169487-129183899 protein_coding
  ENST00000451728 CNBP-010 129169487-129183899 protein_coding
  ENST00000500450 CNBP-004 129169569-129183910 protein_coding
  ENST00000502372 CNBP-006 129170232-129183864 retained_intron
  ENST00000502976 CNBP-002 129169484-129183905 protein_coding
  ENST00000504813 CNBP-003 129169569-129183922 protein_coding
  ENST00000507573 CNBP-005 129171252-129183896 retained_intron
  ENST00000512338 CNBP-008 129171168-129183922 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000422453ENST00000441626ENST00000451728ENST00000500450ENST00000502372ENST00000502976ENST00000504813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000422453 N/A N/A 7.922±0.00 18.242±0.00 18.046±1.78 16.628±0.00 20.419±0.00 32.047±0.00 36.689±0.00 19.481±0.00 67.115±0.00 41.161±22.99 29.736±0.00 N/A
ENST00000441626 N/A N/A N/A N/A N/A N/A 55.919±0.00 N/A N/A 84.626±0.00 87.673±0.00 N/A N/A N/A
ENST00000451728 56.798±0.00 63.159±0.00 3.816±0.00 23.684±14.28 29.733±14.37 31.680±22.62 25.459±18.39 13.923±5.14 17.970±7.97 60.158±0.00 86.695±0.00 32.531±14.81 23.359±1.29 55.357±0.00
ENST00000500450 N/A N/A N/A N/A N/A 71.328±0.00 69.835±0.00 54.444±0.00 20.433±0.00 102.979±0.00 125.284±0.00 N/A N/A 37.390±0.00
ENST00000502372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.468±0.00
ENST00000502976 87.162±0.00 90.686±0.00 12.983±0.00 52.583±22.30 33.279±11.64 46.273±27.38 33.506±18.83 27.802±5.50 24.535±11.09 45.950±22.92 70.304±31.56 50.079±13.64 40.517±10.99 54.732±23.32
ENST00000504813 N/A 26.141±0.00 N/A 23.293±0.00 18.376±0.00 N/A N/A N/A 14.784±0.00 N/A N/A 38.916±0.00 48.586±0.00 26.091±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007J CIL_00007J_0002 CGP 3:129127415-129183922
CIL_000312 CIL_000312_0001 CGP 3:129169484-129277773

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003697 IEA single-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005783 ISS endoplasmic reticulum
GO:0005829 ISS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006695 TAS cholesterol biosynthetic process
GO:0008270 IEA zinc ion binding
GO:0008284 ISS positive regulation of cell proliferation
GO:0044822 IDA poly(A) RNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045776 cnbpa CCHC-type zinc finger, nucleic acid binding protein a protein_coding Danio_rerio
ENSDARG00000070922 cnbpb CCHC-type zinc finger, nucleic acid binding protein b protein_coding Danio_rerio
ENSMUSG00000030057 Cnbp cellular nucleic acid binding protein protein_coding Mus_musculus

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