C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170144 HNRNPA3 9606 + 2:177212563-177223958 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392524 HNRNPA3-001 177212563-177220085 protein_coding
  ENST00000411529 HNRNPA3-002 177212749-177223958 protein_coding
  ENST00000432457 HNRNPA3-008 177216526-177219687 protein_coding
  ENST00000435711 HNRNPA3-014 177212772-177219865 protein_coding
  ENST00000483137 HNRNPA3-012 177219093-177219806 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392524ENST00000411529ENST00000432457ENST00000435711
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392524 22.445±0.00 24.017±0.00 N/A 10.531±0.00 20.854±0.00 5.891±0.00 22.156±0.00 6.501±0.00 16.863±0.00 8.753±0.00 36.193±8.73 44.346±13.57 49.961±18.18
ENST00000411529 17.455±0.00 29.113±0.00 14.854±8.54 12.780±1.54 16.477±4.85 3.749±3.08 11.712±6.46 7.914±0.74 15.732±10.03 4.278±2.12 19.565±10.00 11.094±1.16 13.409±4.81
ENST00000432457 82.380±0.00 118.707±0.00 88.167±0.00 52.458±0.00 92.659±0.00 19.360±0.00 79.935±0.00 22.794±0.00 73.367±0.00 24.904±0.00 115.577±34.41 82.569±32.29 147.566±0.93
ENST00000435711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.798±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00017S CIL_00017S_0001 CGP 2:176269395-177223958
CIL_00017P CIL_00017P_0001 CGP 2:177212563-177392697

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030529 TAS ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059351 hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 protein_coding Danio_rerio
ENSMUSG00000059005 Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 protein_coding Mus_musculus
ENSMUSG00000069014 Gm5641 predicted gene 5641 protein_coding Mus_musculus
ENSMUSG00000096156 Gm9242 predicted pseudogene 9242 protein_coding Mus_musculus

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