C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycophorin A (MNS blood group)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170180 GYPA 9606 - 4:144109303-144140751 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324022 GYPA-002 144111055-144140693 protein_coding
  ENST00000360771 GYPA-001 144109304-144140751 protein_coding
  ENST00000503627 GYPA-006 144111394-144140635 protein_coding
  ENST00000504786 GYPA-005 144111394-144140635 protein_coding
  ENST00000508337 GYPA-003 144111345-144140672 nonsense_mediated_decay
  ENST00000509346 GYPA-010 144118564-144140693 retained_intron
  ENST00000510771 GYPA-008 144110919-144114905 retained_intron
  ENST00000512064 GYPA-007 144111367-144140635 protein_coding
  ENST00000512789 GYPA-004 144111394-144140635 protein_coding
  ENST00000514603 GYPA-009 144119363-144140693 retained_intron
  ENST00000535709 GYPA-201 144111344-144140669 protein_coding
  ENST00000616983 GYPA-202 144109303-144127908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungPlacentaTestisENST00000324022ENST00000360771ENST00000508337ENST00000510771ENST00000512789ENST00000514603ENST00000616983
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Placenta Testis
ENST00000324022 0.085±0.00 N/A N/A N/A N/A N/A N/A 0.741±0.00 0.312±0.00 0.037±0.00
ENST00000360771 N/A N/A N/A N/A N/A N/A N/A N/A 0.260±0.00 N/A
ENST00000508337 N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000510771 0.130±0.00 0.654±0.00 N/A N/A N/A N/A N/A N/A N/A 0.062±0.00
ENST00000512789 0.266±0.00 N/A N/A N/A 0.365±0.00 0.392±0.00 N/A N/A 1.865±0.00 N/A
ENST00000514603 N/A N/A 0.357±0.00 N/A N/A N/A 0.533±0.00 N/A N/A 0.054±0.00
ENST00000616983 N/A 0.046±0.00 0.037±0.00 0.015±0.00 N/A 0.061±0.00 0.011±0.00 0.413±0.00 0.256±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KM CIL_0008KM_0001 VISTA 4:143819940-144420422
CIL_0008YO CIL_0008YO_0001 VISTA 4:144055661-144657567

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001618 IEA virus receptor activity
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0007016 IEA cytoskeletal anchoring at plasma membrane
GO:0008150 ND biological_process
GO:0009615 IEA response to virus
GO:0009897 IEA external side of plasma membrane
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0042802 IPI identical protein binding
GO:0042803 IEA protein homodimerization activity
GO:0047484 IEA regulation of response to osmotic stress
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000051839 Gypa glycophorin A protein_coding Mus_musculus

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