C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pregnancy specific beta-1-glycoprotein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170848 PSG6 9606 - 19:42728080-43205603 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000187910 PSG6-001 42902079-42917858 protein_coding
  ENST00000292125 PSG6-002 42903616-42917837 protein_coding
  ENST00000402456 PSG6-004 42909699-42917882 retained_intron
  ENST00000402603 PSG6-003 42902086-42917882 protein_coding
  ENST00000484292 PSG6-005 42910476-42918010 retained_intron
  ENST00000594375 PSG6-006 42907725-42917887 protein_coding
  ENST00000595062 PSG6-008 42906636-42916398 retained_intron
  ENST00000599753 PSG6-010 42902121-42910804 nonsense_mediated_decay
  ENST00000601833 PSG6-009 42915302-42919563 protein_coding
  ENST00000621241 PSG6-201 42728080-43205603 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverLungOvaryTestisENST00000292125ENST00000402456ENST00000594375ENST00000595062ENST00000601833ENST00000621241
Transcript ID Brain Breast Kidney Liver Lung Ovary Testis
ENST00000292125 N/A N/A 0.039±0.00 N/A N/A 0.214±0.00 N/A
ENST00000402456 N/A 0.134±0.00 N/A N/A N/A N/A 0.152±0.00
ENST00000594375 0.158±0.00 N/A N/A N/A N/A N/A N/A
ENST00000595062 N/A N/A N/A N/A 0.504±0.00 N/A N/A
ENST00000601833 N/A N/A N/A 0.077±0.00 N/A 0.022±0.00 N/A
ENST00000621241 0.060±0.00 N/A N/A N/A N/A 0.008±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UJ CIL_0003UJ_000A CGP 19:42507304-42740384
CIL_0003UJ CIL_0003UJ_000F CGP 19:42580241-42740569
CIL_0003UJ CIL_0003UJ_000I CGP 19:42721638-43205603
CIL_0003UJ CIL_0003UJ_000G CGP 19:42728080-43205603

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005576 NAS extracellular region
GO:0007565 NAS female pregnancy

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041119 ceacam1 carcinoembryonic antigen-related cell adhesion molecule 1 protein_coding Danio_rerio
ENSDARG00000076981 zgc:198329 zgc:198329 protein_coding Danio_rerio
ENSDARG00000078177 cxcr3.1 chemokine (C-X-C motif) receptor 3, tandem duplicate 1 protein_coding Danio_rerio
ENSDARG00000079372 si:ch211-264f5.6 si:ch211-264f5.6 protein_coding Danio_rerio
ENSDARG00000092520 si:dkey-250k15.10 si:dkey-250k15.10 protein_coding Danio_rerio
ENSDARG00000093279 si:dkey-11o1.3 si:dkey-11o1.3 protein_coding Danio_rerio
ENSDARG00000095048 si:dkey-250k15.7 si:dkey-250k15.7 protein_coding Danio_rerio
ENSDARG00000095134 si:dkey-250k15.9 si:dkey-250k15.9 protein_coding Danio_rerio
ENSDARG00000095772 si:dkey-11o1.2 si:dkey-11o1.2 protein_coding Danio_rerio

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