C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171217 CLDN20 9606 + 6:155264013-155276548 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367165 CLDN20-001 155264013-155276548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367165
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367165 0.120±0.00 0.189±0.00 0.350±0.23 0.226±0.20 0.160±0.14 0.159±0.13 0.990±0.63 0.231±0.19 0.039±0.00 0.224±0.00 0.315±0.22 0.116±0.06 0.163±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055I CIL_00055I_0001 CGP 6:154832697-155314493
CIL_0002QM CIL_0002QM_0002 CGP 6:155257509-155314493
CIL_00055H CIL_00055H_0001 CGP 6:155264013-155455903

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0034329 TAS cell junction assembly
GO:0042802 ISS identical protein binding
GO:0045216 TAS cell-cell junction organization
GO:0070830 TAS tight junction assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067725 CLDN20 (1 of 2) claudin 20 protein_coding Danio_rerio
ENSDARG00000077430 CU695076.1 Claudin protein_coding Danio_rerio
ENSMUSG00000091530 Cldn20 claudin 20 protein_coding Mus_musculus

Loading