C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuronal pentraxin I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171246 NPTX1 9606 - 17:80467148-80477843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306773 NPTX1-001 80467148-80476604 protein_coding
  ENST00000535681 NPTX1-002 80467148-80474698 retained_intron
  ENST00000571100 NPTX1-005 80471903-80475812 retained_intron
  ENST00000575212 NPTX1-004 80473414-80477843 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306773ENST00000535681ENST00000571100
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306773 0.158±0.00 0.025±0.00 8.629±1.79 0.111±0.10 1.668±1.15 0.029±0.00 0.471±0.00 0.159±0.00 0.129±0.00 0.133±0.11 0.675±0.33 1.152±0.46
ENST00000535681 N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.113±0.00 N/A N/A
ENST00000571100 N/A N/A N/A N/A N/A N/A N/A N/A 1.738±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042I CIL_00042I_0001 CGP 17:80415165-80477843
CIL_00042J CIL_00042J_0001 CGP 17:80467148-80966371

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005886 IEA plasma membrane
GO:0006810 TAS transport
GO:0006839 IEA mitochondrial transport
GO:0007268 TAS synaptic transmission
GO:0007417 TAS central nervous system development
GO:0031410 IEA cytoplasmic vesicle
GO:0035865 IEA cellular response to potassium ion
GO:0043005 IEA neuron projection
GO:0043653 IEA mitochondrial fragmentation involved in apoptotic process
GO:0046872 IEA metal ion binding
GO:0060385 IEA axonogenesis involved in innervation
GO:0071333 IEA cellular response to glucose stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074671 nptx1l neuronal pentraxin 1 like protein_coding Danio_rerio
ENSMUSG00000025582 Nptx1 neuronal pentraxin 1 protein_coding Mus_musculus

Loading