C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor A (SII), 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171703 TCEA2 9606 + 20:64049836-64072347 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339217 TCEA2-003 64063237-64070635 protein_coding
  ENST00000343484 TCEA2-001 64063144-64072346 protein_coding
  ENST00000361317 TCEA2-008 64057293-64072346 protein_coding
  ENST00000395053 TCEA2-201 64063158-64072346 protein_coding
  ENST00000415602 TCEA2-009 64063481-64068134 protein_coding
  ENST00000440819 TCEA2-004 64064087-64070635 protein_coding
  ENST00000458442 TCEA2-002 64066211-64071941 protein_coding
  ENST00000461072 TCEA2-006 64070291-64072346 processed_transcript
  ENST00000465111 TCEA2-005 64065550-64072345 processed_transcript
  ENST00000465433 TCEA2-015 64069464-64072347 processed_transcript
  ENST00000470559 TCEA2-012 64064326-64069372 processed_transcript
  ENST00000475236 TCEA2-016 64070328-64072346 processed_transcript
  ENST00000475792 TCEA2-010 64049836-64062867 processed_transcript
  ENST00000476113 TCEA2-007 64063196-64064123 processed_transcript
  ENST00000477783 TCEA2-014 64069765-64072347 processed_transcript
  ENST00000487164 TCEA2-011 64063158-64070209 processed_transcript
  ENST00000495168 TCEA2-013 64070214-64072347 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339217ENST00000343484ENST00000361317ENST00000415602ENST00000440819ENST00000458442ENST00000465111ENST00000465433ENST00000475236ENST00000476113ENST00000477783ENST00000487164ENST00000495168
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339217 N/A N/A N/A N/A N/A N/A N/A 1.908±0.00 N/A N/A N/A N/A N/A N/A
ENST00000343484 3.017±0.00 10.589±0.00 0.912±0.00 38.502±32.56 4.007±0.00 14.993±0.00 3.312±0.00 9.038±7.47 1.354±0.00 4.398±3.80 1.646±1.18 19.079±16.01 12.617±1.74 75.323±8.76
ENST00000361317 2.265±0.00 N/A 0.219±0.00 1.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415602 6.308±0.00 N/A N/A N/A N/A 9.548±0.00 N/A 12.286±0.00 N/A N/A N/A N/A N/A N/A
ENST00000440819 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.605±0.00 N/A N/A N/A N/A
ENST00000458442 N/A N/A N/A N/A 0.126±0.00 N/A 0.244±0.00 4.858±0.00 N/A N/A N/A N/A N/A N/A
ENST00000465111 N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A 0.329±0.00 N/A 0.134±0.00 N/A N/A
ENST00000465433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.404±0.00 N/A 41.230±0.00
ENST00000475236 N/A N/A N/A 3.170±0.00 N/A N/A N/A N/A 1.227±0.00 N/A N/A N/A N/A N/A
ENST00000476113 10.302±0.00 N/A N/A N/A 18.786±0.00 8.913±7.47 10.640±0.00 N/A 2.939±1.26 21.823±0.00 7.212±0.00 0.803±0.00 17.185±0.00 N/A
ENST00000477783 N/A N/A N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A 3.284±0.00 7.153±0.00 5.277±0.00 34.493±0.00
ENST00000487164 N/A N/A N/A N/A N/A N/A 0.099±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000495168 N/A N/A N/A N/A 1.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V3 CIL_0003V3_0001 CGP 20:64047582-64072347
CIL_0007I6 CIL_0007I6_0001 CGP 20:64049836-64079988

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003746 IEA translation elongation factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005813 IDA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0006354 NAS DNA-templated transcription, elongation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006414 IEA translational elongation
GO:0008023 NAS transcription elongation factor complex
GO:0008270 IEA zinc ion binding
GO:0032784 IEA regulation of DNA-templated transcription, elongation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012927 tcea2 transcription elongation factor A (SII), 2 protein_coding Danio_rerio
ENSMUSG00000059540 Tcea2 transcription elongation factor A (SII), 2 protein_coding Mus_musculus

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