C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease H1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171865 RNASEH1 9606 - 2:3544793-3558616 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315212 RNASEH1-001 3545115-3558616 protein_coding
  ENST00000436842 RNASEH1-002 3544793-3558289 nonsense_mediated_decay
  ENST00000454734 RNASEH1-003 3550374-3558332 nonsense_mediated_decay
  ENST00000464986 RNASEH1-004 3550124-3552308 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315212ENST00000436842
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315212 5.055±0.00 0.884±0.00 3.529±0.00 4.638±0.57 3.423±0.00 1.428±0.00 2.970±2.19 4.367±0.30 3.004±0.54 2.261±0.00 7.480±3.80 6.717±4.39 9.495±0.00
ENST00000436842 N/A 0.322±0.00 1.609±0.00 2.300±1.33 N/A N/A 3.605±0.00 1.290±0.27 1.058±0.00 1.281±0.11 1.484±0.67 2.417±0.61 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EQ CIL_0008EQ_0001 VISTA 2:2964425-3567078

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0003676 TAS:IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0004523 IEA RNA-DNA hybrid ribonuclease activity
GO:0004540 TAS ribonuclease activity
GO:0005634 IEA nucleus
GO:0005739 IEA mitochondrion
GO:0006264 IEA mitochondrial DNA replication
GO:0006401 TAS RNA catabolic process
GO:0042803 IEA protein homodimerization activity
GO:0090501 TAS RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042571 rnaseh1 ribonuclease H1 protein_coding Danio_rerio
ENSMUSG00000020630 Rnaseh1 ribonuclease H1 protein_coding Mus_musculus

Loading